Array 1 95768-97352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERVQ010000008.1 Listeria welshimeri strain UCDL162 NODE_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 95768 29 100.0 36 ............................. GTCGTCGTAAGCCTCTGTAATCTCTTTTTCTAATTG 95833 29 100.0 35 ............................. CGATTAAAGCTAGTTTTATGCCCTAAAAACTTAAT 95897 29 100.0 36 ............................. GCTTTTGAAGTATGGTTCTAAGCATTTGTGAACCTG 95962 29 100.0 36 ............................. AACCCAAACAACAGATTTAAACGGTGCAGCAAGCTT 96027 29 100.0 36 ............................. TTAATTATAGAATATGACGGTTTTTCAGAAGTTTAC 96092 29 100.0 36 ............................. AAAGATAAACGACTTTGGAATATGAAAAATGCGAAG 96157 29 100.0 34 ............................. ATTTTTAAGGTTAGTAGACAATGTTTGATTTTTC 96220 29 100.0 36 ............................. AGTATACAATCAAGTTGCAGAAATCATTGTCGGTTC 96285 29 100.0 38 ............................. GAATATTATGAGTTACATTTAGATGAAATGCGACAACA 96352 29 100.0 38 ............................. GAAGAAAAAACTGCATTTTTTCAGCAATGTGCAGATAT 96419 29 100.0 36 ............................. AATTTTCGTTATGAAGTACTTGAACATGTCTCTGAT 96484 29 100.0 34 ............................. TTTTTATGAATAACGTTTTCAGTCATGTTCTAAC 96547 29 100.0 35 ............................. TTTATACATCGCGATGGACAAAAGCTGGCAGAGCA 96611 29 100.0 34 ............................. TTGTTTTAATTTTTTTAATTCGTCTGGAATTTGT 96674 29 100.0 36 ............................. AAACTTATTCACTTAAAAGAGCATATCAATCAACTT 96739 29 100.0 36 ............................. TTTCTCTTATTTCAGCTTCTGTGAATCTTGTTTTAA 96804 29 96.6 35 ............................A GTAAAAACCTGTGCTTGATCGCTCAGCTGCATGAA 96868 29 100.0 35 ............................. TTCATTCCATTTTCTAACATATACTTATAAATTTC 96932 29 100.0 38 ............................. ACTTTGCGTGCTTTTACAAACATAATTAATCCTCTCCT 96999 29 100.0 36 ............................. AGCGTTGAAAGTTGCTCTTGGCTCAGCAGCAGCTGC 97064 29 96.6 36 ........................C.... GTAAAACAAATTAATTAGTTCATGCAAGGTGCAAAT 97129 29 100.0 37 ............................. TGGGTAAGAAAGAAAAAGAAAAGTTCTGGGAAAAAGC 97195 29 100.0 35 ............................. TCTACAATTTCAGCAACAAAGTATTTCGTTTTCGC 97259 29 100.0 36 ............................. GAATTATTTGAAACTGATACCGCCGGAACAGTCCAT 97324 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : CTCCTTCCCTAAACAATACACCCCCCAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCTGCCACAATCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAATAATCCCCACACAAGCCCTACCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTTGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATTACGATGAAAGTTAAAATAAATGCTAAAATGGTCATCTAAATCCCTCTTTTCTACTTCGAAGTATAGCATGAATTGTAAATTTTTCATGAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //