Array 1 26337-26035 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXSX01000008.1 Streptococcus mutans PKUSS-LG01 PLG01_scaffold56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26336 36 88.9 30 T.....AC.................A.......... CATGCAATTACATATTCAACTAAGGGGCCA TT [26327] 26268 36 100.0 30 .................................... CGTTCAAAACTTCTGCCCCAGCTGGCAAGA 26202 36 100.0 30 .................................... ATCATCAAATATCATTTGTGCCTCCTTTTA 26136 36 97.2 30 ...................................T CGGCACATATAATCCGTAAAGGCGGCACAT 26070 35 72.2 0 ..........CA.......A.TG..T-.A.T....T | A [26055] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 91.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TAAGGTTTTGGATGCCCAATACAAAGCAATCAAAAAACAACCAATACCTTTTGAAAAAGCTTTAGACAATATCTTTGGAAAAGATTTAGGTATCGAAACAACCGATCCGCTGGATGCACTATTGAAGTAGAAACACTAAATTAATAAGAAAGAGCCAAACCTCGAAAGTTTGGCTCTTTCTTATTGACTAAATCATGGTTAATGTAAACTTACATTTGGGTTAATTTTTTATTAATGCTCAAATATCACTGAATATTTAGGCATTTTCAATATGGAATCAAACTTGAGAAGCAACTGTCAGTCAATTTTATAGTAGAAATAAGGATGAACACATTAATTTGCTTTCTGAAATGAAAAAATACAGAAATATTTCTATATTTTTTCATTTATATTGTTAAAATATTTCGCAGATAGTGGTATAATAGAAACGCTTACAGTAAAGCAAATAAAAAAGCACCGAATCGGTGCGCACTTTTTCAAGTTGAATACGGATAAACCTT # Right flank : GCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAATT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 119686-118621 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXSX01000008.1 Streptococcus mutans PKUSS-LG01 PLG01_scaffold56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 119685 28 100.0 33 ............................ TAGGAAAGAGGAAACAATATATGGCAACTGTAG 119624 28 100.0 33 ............................ TGATCCAAGCGCTTTTCCTGCACCTTTGATTAA 119563 28 100.0 33 ............................ TATCTTGCGAGATTTCCACACAATCAACCGACA 119502 28 100.0 33 ............................ TAATCATTTTGTTACCTCGTTATTAAATTACAT 119441 28 100.0 33 ............................ TAAGCGCATTCAAGTGCTCGAAAGTTACGCAGA 119380 28 100.0 33 ............................ CTGACTCAAGAGGTATGCGGTCCGACGCAGTCA 119319 28 100.0 33 ............................ TTAGTGCTTAGCTTGCTGTTTAAGTATTCTAAA 119258 28 100.0 33 ............................ TGCCTCTCTAAAAGCTGACACTATAGCAACTTT 119197 28 100.0 33 ............................ ATATGCAAGTCTTTTATAATCGCTATCGTCGTA 119136 28 100.0 33 ............................ TAAGACCAATTCCTTATTTCTGATTCTATTATA 119075 28 100.0 33 ............................ TACGACAATATTTAGCTGGTGTGAATTTTTGAG 119014 28 100.0 33 ............................ TATGCACGCGCTAAATATATCCAATTAAACCAA 118953 28 100.0 33 ............................ TACAATCTCTAACTGAGTCTAGATTAACAATTA 118892 28 100.0 33 ............................ CAATTTGATTGACTACTTGTTCACGCTCTGCAA 118831 28 100.0 33 ............................ TGCACAACCATGTTGTTACCGTCAATCCGTTCA 118770 28 100.0 33 ............................ CGAACAACCATCAAAGAATTATGATCCTTTATC 118709 28 100.0 33 ............................ TACATGCATAGCGTTAATTGATAGCGAGGCAAC 118648 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGCCCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTATACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTTCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGCAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //