Array 1 90287-91839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUO010000013.1 Streptococcus thermophilus strain 13495 202-13495-13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 90287 36 100.0 30 .................................... GAATCATGATTGGTTTATCTGTGGGCTTCA 90353 36 100.0 30 .................................... AAAGAAATTAAAAAAACCTAGCGAAGCACT 90419 36 100.0 30 .................................... TTCGCATAAGACTTCTTCAAACCAAAACAT 90485 36 100.0 29 .................................... GTCCATAGGTATTTCCCTTTAATTAAAGT 90550 36 100.0 30 .................................... TAGAGATGACGACGGACTACCTGGCAAGAA 90616 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 90682 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGCACAT 90748 36 100.0 30 .................................... AGGTAACATTGGTTCAACAGCAGTCTAATT 90814 36 100.0 30 .................................... TCGTTACCTTGTCTTTGCAAATCACGCAAA 90880 36 100.0 30 .................................... AATGAAGAAGCCGATTCAAGCTCAAGGGTC 90946 36 100.0 30 .................................... TATTTCTGTCCGATACGAAGTATCAGGGAC 91012 36 100.0 30 .................................... TACGCCCGTTTGGATTGAACATGATAGAGC 91078 36 100.0 30 .................................... GAGCCTACTAATGATTACATTTTGAGGACG 91144 36 100.0 30 .................................... CCAAAGAATGGACCACCTTAATGAGAATAT 91210 36 100.0 30 .................................... TTTCAAAATCTTCGAATAGGCAGTCGAGCA 91276 36 100.0 30 .................................... AAAATGTACAAATTTTCATGCTAGGGAATA 91342 36 100.0 30 .................................... TACAGCTCTTGGTTTCGTCTATCCTTATGT 91408 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 91474 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 91540 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 91606 36 100.0 30 .................................... AAGCACTGGACGACAAATAAATAATTGAAG 91672 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 91738 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 91804 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 5394-4039 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUO010000075.1 Streptococcus thermophilus strain 13495 202-13495-75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5393 36 100.0 30 .................................... AACAACCAAGCTAATACAACAGTATCACCA 5327 36 100.0 30 .................................... AGAAACGAGAAAAAAGATAAAAAAATTTTA 5261 36 100.0 30 .................................... AACCATCATTTGATGCTGCCATGTAGTTAT 5195 36 100.0 30 .................................... AATAAGGAGGAAACCTCTGTTCTTTCAATC 5129 36 100.0 29 .................................... CTTGCAGAGATGCACATGCAGTTAAATAT 5064 36 100.0 30 .................................... CTTACTATGACATGTTCAAAAAGCAACTTC 4998 36 100.0 30 .................................... ACTGAATAGCCAGTTTCACTAGTGTTATCA 4932 36 100.0 30 .................................... CTATCATCCGTGATATATAATATACATATA 4866 36 100.0 30 .................................... AAATGTCTCTAGCAACGATATTAAGCTATA 4800 36 100.0 30 .................................... ATTCCAGTATTGAAAAGATTAGATGAAGTA 4734 36 100.0 30 .................................... CGTGTCGAATATGACGATAATGACGATGAC 4668 36 100.0 30 .................................... CTCCTCTTAAAAATTATAAAATTTCATAGT 4602 36 100.0 30 .................................... GAAGAGAAGCAAGAGCAAATTGAAAAGATT 4536 36 100.0 30 .................................... TCATATATCGTCATTTGTTCTACTTCATCA 4470 36 100.0 30 .................................... TAATCCAAAGAAACATAAATGCTAATGAGC 4404 36 100.0 30 .................................... TTCATTGTTTGTTTACTCCTAATTTTTCTA 4338 36 100.0 30 .................................... AATGTGCTTAACATTTCTGATTGCGCCTTC 4272 36 100.0 30 .................................... TGCTTTCGTCAAAGGTTGAGTTCGCAATGC 4206 36 100.0 30 .................................... AATAGATAGTGAAACTGATACCGTCACTGT 4140 36 100.0 30 .................................... TGGAAAATAGTTAAAATAAAGAAAGGAAGT 4074 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGAGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //