Array 1 1470415-1467986 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084165.1 Pasteurella multocida strain s4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1470414 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 1470354 28 100.0 32 ............................ ACCTTTAGTGTCAGCAGATTTTAAAACAGATT 1470294 28 100.0 32 ............................ AGTTTCCGTTTTGACGAAGTTTGAAAGTTGTT 1470234 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 1470174 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 1470114 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 1470054 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 1469994 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 1469934 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 1469874 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 1469814 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 1469754 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 1469694 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 1469634 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 1469574 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 1469514 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 1469454 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 1469393 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 1469333 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 1469273 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 1469213 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 1469153 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 1469093 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 1469033 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 1468973 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 1468913 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 1468853 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 1468793 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 1468733 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 1468673 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 1468613 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 1468553 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 1468493 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 1468433 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 1468373 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 1468313 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 1468253 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 1468193 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 1468133 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 1468073 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 1468013 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAACCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //