Array 1 8638-7216 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPX01000024.1 Streptococcus mitis strain BCC17 D8787_contig024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8637 36 100.0 30 .................................... TGATGATGAAGGTGTTGTATCAGTCGGTAA 8571 36 100.0 30 .................................... TTGACAAAGTGGCGCTAGACCTCGCAGAAA 8505 36 100.0 30 .................................... GACTCAGATAGCGCTGAAAGGTCGGTCTTG 8439 36 100.0 30 .................................... ACCGACTTATTACGAGGTTGTAAGACATCG 8373 36 100.0 30 .................................... CAGCCGTGAAGCAGATGAATGATGCGTGGA 8307 36 100.0 30 .................................... ACCGACTTATTACGAGGTTGTAAGACATCG 8241 36 100.0 30 .................................... CAGCCGTGAAGCAGATGAATGATGCGTGGA 8175 36 100.0 30 .................................... CAGCCCTAGCTCGATATACATCTGACCTAA 8109 36 100.0 30 .................................... ATGCTATTGATTTTGAAACGCTCAAGGATA 8043 36 100.0 31 .................................... AGATGCAGTTAAGCATAAGATGGCTAGTAAC 7976 36 100.0 29 .................................... ATGTGGTCAGTCATATCTTGAAGACCTCC 7911 36 100.0 30 .................................... CCTGATAGTGGAACGGCAACGAACATGGAA 7845 36 100.0 30 .................................... TTGGCTGTAGCTTGTTCCAGGATAGCCATA 7779 36 100.0 30 .................................... TTGAGCGACTGGAAGCTGACAAGCAATTTA 7713 36 100.0 30 .................................... GATTCCGGCCAATATTTCGTCAACAAAGCT 7647 36 100.0 30 .................................... ATATCTTTTGTCCGATTCCAATTGGTATCT 7581 36 100.0 30 .................................... ATTGAGAAAGGGGAGCAATTCATCTATTTA 7515 36 100.0 30 .................................... TACACAGAGGGGCATGAGTGCCAGCAACAT 7449 36 100.0 30 .................................... TAATAGCGGAAGTACAGAGAATGACCTTGC 7383 36 100.0 30 .................................... CATGAGTGGAGAAAATATCAGGATTGACTA 7317 36 97.2 30 ...C................................ GAAAGTCCTTGACGGTAAAGAAGTTCAAAT 7251 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGACAAGCCCGAAGTCAAATCCATGATTGAAAAGCTGGTTGCTACGATTACAGAATTGCTAGCATTTGAGTGTTTAGAAAACGAGTTAGACCTAGAGTATGATGAAATTACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACCCTGAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCCGCCTATCTATCAAAGGATGAGTTAGTAAATTTGATAGAGTATATCCAACTCAATCAACTGTCCGTCTTGTTTATTGAGCCTCGGCAAATCTATGATTTTCCGCAGTATGTATTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : ACATTAAAAGCTACTCATTTTTTAAGTAGCTTTTTTCTTATTCAAGTTTACATATTATACTCTTCGAAAATCTCTTCAAACCACGTCAACGTTGCCTTGCCGTACTCAAGTACAGCCTGCGGCTAGTTTCCTAGTTTGCTCTTTGATTTTCATTGAGTATTAGTCGTCACATTCCCATTCCCTTGTAGAAAAGCAAAACTACAAGTACTACGAATAACACTAACGCTACCAGTCTCTGACTAGCGCTATACATCCGTCTTTCTCCTCGAACTGGAAAGATAACTGCTAGTAATGCTCCACCAACTGCACCACCGATATGGCCTGCTAGGCTTATTCCTGGAATCAGAACACTTCCAATAATGTTAACCACAAAAAGTGTCAGATAAGATTGCCCTAGCTGTTGGATATAAGGATTACGCGTAGCATAACGAAGAATGATAATCGCGGCAAATAGTCCGTAAAGAGAGGTGGATGCTCCTGCTGCTAAGGATTTGGGACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //