Array 1 655350-656762 **** Predicted by CRISPRDetect 2.4 *** >NC_008599.1 Campylobacter fetus subsp. fetus 82-40, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 655350 30 100.0 34 .............................. TCATTTTTGTCATCAGGACCAGGAGAACTGACAC 655414 30 100.0 36 .............................. TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT 655480 30 100.0 36 .............................. TCGAATAAGTTGTTAAGATTATGCAACTTTTTTGTA 655546 30 100.0 36 .............................. TGAGCATATTCTGGATAAGATAAAAGTGCGTGAATA 655612 30 100.0 36 .............................. AGCATTTTAACGATAGAATCAAACTTTTTAGCTTTT 655678 30 100.0 36 .............................. GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT 655744 30 96.7 35 ............G................. CGGGGAGCAACGTTAGCAATCTCATTTCCGTCCAT 655809 30 100.0 36 .............................. TGGGGATTCGATGAAATTTTTAACTATATAGCATTC 655875 30 100.0 36 .............................. TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT 655941 30 100.0 36 .............................. TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC 656007 30 100.0 36 .............................. TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA 656073 30 100.0 37 .............................. ATTAAAGCCGAATTACTCCCATTTTTTTTTGACTTGG 656140 30 100.0 36 .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 656206 30 100.0 36 .............................. TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA 656272 30 100.0 36 .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 656338 30 100.0 36 .............................. TAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACC 656404 30 100.0 35 .............................. AATCCAACTTAACAAAAATGTTATATAAAATCACC 656469 30 100.0 36 .............................. TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT 656535 30 100.0 36 .............................. AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT 656601 30 96.7 36 .........................T.... CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT 656667 30 100.0 36 .............................. CATCCTCCTTTTAATTTATTACATTTAAACAATTTA 656733 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 99.7 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATATAATTTTTTGTATAATCCAACTTCTATTTTATAGTTATTTATTACTCTAAGCCTAAATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CAAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTACTAAGTGCAAATACTAGCTATTTTGAAGGAGTGAGTGACCACATTATAAGTCAGGCTCAAAACATAGCTAGAGTAAATCAGTCTAGTAAATACGGAGTAAAGCATTACAAAGTATTAGCTAGGATAGATAGCCGTACAAGCGATATCTGTAGAAGTATGAACGGACGCATAATCCCAGCCTCGCATATAGAAGCTCAAAGCAACAATATCCAAAACGCTAAAGATATAAACGAGAAAAAAGCAGCTGCTATTTGGAGAAATGAGCCTTTTTTGGGTAAAATACTCCCTAGTAACTTCGGGCTTCCACCATATCATTTTCGTTGTAGAACCGAGCTAGTACCGGTGTGGATAAATGAAGAAGAGATCGATGGAGTAAAGATGAAAAATACAAGCCCGCTTAGCAAAGATGAAGTAGTAAAGCATATAGATAAAACTGGGGTTGAGAGAGTAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 674442-676187 **** Predicted by CRISPRDetect 2.4 *** >NC_008599.1 Campylobacter fetus subsp. fetus 82-40, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 674442 30 100.0 36 .............................. TCGTTAATATTATTTTTGTTGCAATGTTTGCATTTT 674508 30 100.0 36 .............................. TCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATG 674574 30 100.0 36 .............................. AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGCGG 674640 30 100.0 34 .............................. TTTTGTCATCAGAACCAGGACCAGGAGAACCTGA 674704 30 100.0 37 .............................. TGATGTATTGACTTTGAAGATAGCAATCATAGGCAAA 674771 30 100.0 36 .............................. GGCGCAGCCGTAGAATTAGGGCTTAGTTTCGGCAAT 674837 30 100.0 36 .............................. CTTTTTTCAAGCTCGATTTTAATATCCCATTGCGCG 674903 30 100.0 36 .............................. TTTTTACCGTTTTGAAAATCAACAAAAAGTTCTATA 674969 30 100.0 36 .............................. TCATTAAAACACGATATTGTGATCCGCCTTTCATAT 675035 30 100.0 37 .............................. CCTTTATAATCTATACTAAAACCATTTAATATAATAT 675102 30 100.0 36 .............................. GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA 675168 30 100.0 36 .............................. GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA 675234 30 100.0 37 .............................. GGGGATATGGTAAAATCTGCAGTTAAATCTAAGTTAT 675301 30 100.0 36 .............................. GATAATCAAAATTTTACAAAGCAAGTTCTTGTACAC 675367 30 100.0 36 .............................. CCATTTAGCATATCATATACTTGATCTGCCATTTAT 675433 30 100.0 36 .............................. ACTTTTAGGTGTTGCAAGGAGATAGTAAGAGATGCA 675499 30 100.0 36 .............................. TCTGATAAAATGTATTTGGATCAATACCTAAAGCTC 675565 30 100.0 36 .............................. TCGTAATCTTCTTCCATAATTTTAAAGTATAGATTA 675631 30 100.0 35 .............................. TCGAATCCGTATGTGTTTACAACTTCTGAATCTTC 675696 30 100.0 36 .............................. TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT 675762 30 100.0 36 .............................. TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT 675828 30 100.0 35 .............................. TCTTTGCTTTTTGTCTTTGCTATTTTACTTTTAAG 675893 30 100.0 36 .............................. TCGAAATACAAGCTCGCGCAAAATGGAATCCATTCT 675959 30 100.0 36 .............................. TTAAATCTCCTTATCGCTTATTATATTTATTAATTT 676025 30 100.0 37 .............................. TTATCTATGATTTGGACGTTTGTGAGCGCGGAGCTTA 676092 30 100.0 36 .............................. ATGGAATATTTTTGTTAAACGCATTCATACAAAATT 676158 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AACTCCTGCAAATTTTATTAAATTTAAATCCGCGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CGGCGGTATTGGAAGTATAAAAATTAATAACGTTGTTGTTTGCTAATTTTTAACACAAAATTGCCTGTAGCAATATATTTAATATTTGCATTATATCTGCAAACTTTTAAAATAAACTTAAAAAAGGATTAAAATGATAAAAAAATTAACAGATAAACGGCTATCTGAAATAACAAAAATTCCGTATGGAACTATAGCAAGCTGGAAGAGATCTGATGGTTACACAAAAGATATATATCTTTTCTTTAAAAATTTAGACCCGGAATTCTTAATAGAGAATTTTGGAGCCAAAACTCCTATAATTCCTTTACGGGATAAAGAAGTAGTAGGCGCAATAGGTATTTCGCAAGGCACCCTGTATGGCTGGAAAAATGGGAAGGGGCATAGAAAAAAGCTATATGATTTTATAGCGCAATTTAGCGCAAAAGAGATTTTAGATATCTGTGCAAAAGAAAAAGATAGCATAAATGATAAAACGCTCTCAAAAATAACTAAAATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //