Array 1 22771-22442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFV010000021.1 Erwinia amylovora strain MLI90-17 NODE_21_length_46541_cov_21.767691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22770 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 22710 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 22650 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 22590 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 22530 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 22469 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 33851-32234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFV010000021.1 Erwinia amylovora strain MLI90-17 NODE_21_length_46541_cov_21.767691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33850 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 33789 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 33728 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 33667 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 33606 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 33545 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 33484 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 33422 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 33361 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 33300 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 33239 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 33178 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 33117 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 33056 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 32995 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 32934 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 32873 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 32811 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 32750 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 32689 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 32628 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 32567 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 32506 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 32445 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 32384 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 32323 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 32262 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46494-44758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFV010000021.1 Erwinia amylovora strain MLI90-17 NODE_21_length_46541_cov_21.767691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46493 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 46432 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 46371 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 46310 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 46249 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 46188 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 46127 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 46066 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 46005 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 45944 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 45883 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 45822 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 45761 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 45700 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 45639 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 45578 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 45517 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 45456 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 45395 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 45334 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 45273 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 45212 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 45151 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 45090 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 45029 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 44968 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 44907 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 44846 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 44785 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.1 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GAGCGGGGATAAACCGGATTGCGCATGAGCACTGAAATTGTTCACAG # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 505-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFV010000006.1 Erwinia amylovora strain MLI90-17 NODE_6_length_218830_cov_21.072374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 504 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 443 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 382 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 321 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 260 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 199 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 138 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GGATTGCGCATGAGCACTGAAATTGTTCACAGCGTGTTCCCCGCGTGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //