Array 1 425006-426010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMO010000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 2433 NODE_2_length_606834_cov_54.1666, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 425006 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 425067 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 425128 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 425189 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 425250 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 425311 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 425372 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 425434 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 425495 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 425556 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 425617 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 425678 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 425739 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 425800 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 425861 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 425922 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 425983 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 442575-444068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMO010000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 2433 NODE_2_length_606834_cov_54.1666, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 442575 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 442636 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 442697 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 442758 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 442819 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 442880 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 442941 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 443002 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 443063 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 443124 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 443185 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 443246 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 443307 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 443368 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 443429 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 443490 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 443551 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 443612 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 443673 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 443734 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 443795 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 443856 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 443917 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 443978 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 444039 29 100.0 0 ............................. | A [444066] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //