Array 1 142533-142926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUR010000066.1 Salmonella enterica subsp. enterica serovar Brunei strain FW-H5-Feb NODE_73_length_340611_cov_55.202831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 142533 29 100.0 32 ............................. CCCGCGCACCTGGCATCGTTCACGTTGAACAG 142594 29 100.0 32 ............................. CCTTCTTTCGTATGCACGAACACCCATTTATG 142655 29 100.0 32 ............................. GTCACGAACGAACCAGGCAATCATCGCGCACA 142716 29 100.0 32 ............................. CCGGTTTGATAATTATAAATCAATTGGCAGGA 142777 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 142838 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 142899 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 152159-153896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUR010000066.1 Salmonella enterica subsp. enterica serovar Brunei strain FW-H5-Feb NODE_73_length_340611_cov_55.202831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 152159 29 100.0 32 ............................. GGTCCGAATACGCATTGAGAACAATATAGAGC 152220 29 100.0 32 ............................. TCACTCATTTGTCCTCCATTGCTCACCGAATC 152281 29 100.0 32 ............................. CTACTGAAATATAATGGTACGCCCTGTAGGAT 152342 29 100.0 32 ............................. AGATGAATATGTCTCAGTCCCAGCTGGCAACA 152403 29 100.0 32 ............................. AGAAATCAGGTCGAGTGAGTACGAACCTTATT 152464 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGGCCGTATT 152525 29 100.0 32 ............................. CGTAGAGGGATATTCCACAGGCGAACGCACAA 152586 29 100.0 32 ............................. GCGAGTAACAAAGGTTGAAATGTGCTCATGAT 152647 29 96.6 32 ............T................ TCGCTTGCGCTCCGAATGGGGCGCACACTTTC 152708 29 100.0 32 ............................. TTCGTTCTAAACAGAGATGGTTGGTTAGATAT 152769 29 100.0 32 ............................. AAACCGTTAGACGTGGTATAGCCAGGGTTTGC 152830 29 100.0 32 ............................. CAAGGTTTCTGAAAATGAGCGCGTTTCCGTTC 152891 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 152952 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 153013 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 153074 29 100.0 32 ............................. CCGCAACTAAGTTCTATGTGGATAGTACAGTT 153135 29 100.0 32 ............................. CGAATTTAAGAGTCGCATCTGTATTTAATGGT 153196 29 100.0 32 ............................. AATAGCACGCCTGCCGTTGTTTCCCGCGTCTT 153257 29 100.0 32 ............................. GGAGCACGGTAAACTACTGGCGCAAGGGCCGC 153318 29 100.0 32 ............................. CACCCCCTCGATCCATAACCCCCTTTGTATCC 153379 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 153440 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 153501 29 100.0 32 ............................. CCAAAAGAATTCTCAGCATATCTTTAAGTATT 153562 29 100.0 32 ............................. CCAACAGACAACCAATGCGCAGGGGTAAGGCG 153623 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 153684 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 153745 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 153806 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 153867 29 89.7 0 A........T..T................ | A [153893] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCTGTATCAGCCGGACTCCCGTCCCAGCCTTATTCTGGCGCATAGCGCGCGTCGCTTAATGGATCGTTTCAATCAGTCAATATGGTCGGTCACTCTTTCTGGTACGGAAGAACCCGATGAAGCGCAGCCTTATAGTCAGGGATGCGTCGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGCGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCCTGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //