Array 1 1201526-1202874 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076668.1 Pseudomonas cichorii strain LJ2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1201526 28 100.0 32 ............................ ACCACCCCACGTGATGTCTCAAAAGCCTTTGC 1201586 28 100.0 32 ............................ TGCGACAACCCCTGCCCCGAGCAATGTCGTTT 1201646 28 100.0 32 ............................ GAACAGGTCCACGTTCACGAGCTGAAGTATCT 1201706 28 100.0 32 ............................ AGATTGTCTACGCTCTGCGCCTGAACTTCTGT 1201766 28 100.0 32 ............................ AAATCCAATTGGTCGATTCCACGATATGCAGG 1201826 28 100.0 32 ............................ GATCGATCGGCAAAGCCCCGCGATGATGAGCA 1201886 28 100.0 32 ............................ TAGCGTGTATGCGTTATGCCCGCTCACAGAGC 1201946 28 100.0 32 ............................ CAGGTAAGCACAATGCATCAGTTAGCAAGACG 1202006 28 100.0 32 ............................ CCTATGAACCCGACGAATTGCGCATTAGGATC 1202066 28 100.0 32 ............................ CCTATGAACCCGACGAATTGCGCATTAGGATC 1202126 28 100.0 32 ............................ TAAGTGATGCGCAATTATTACCGCTCGGTAAA 1202186 28 100.0 32 ............................ AGCATCCATTCGGTGCGGGAAGTGGCCCAGTC 1202246 28 100.0 32 ............................ AGGACGTACGCTTTTCCTCGCCTACCATGTAC 1202306 28 100.0 32 ............................ TGAAACGCCGCCGTTCGCGCCAGCAAATTCTG 1202366 28 100.0 32 ............................ AAGAACATCATCCGGGGCTTAGTCGAGTAGGC 1202426 28 100.0 32 ............................ ACCGCGAGCCATGGGCAACACCAGATCAGGTA 1202486 28 100.0 33 ............................ GATCTGAATGCGCTTGCCCAGGGCAACATCCAC 1202547 28 100.0 32 ............................ ATTGCCCGCGAACGAGAATTTCGCCGCATCCA 1202607 28 100.0 32 ............................ TCGGGCCGCTGGCCGCGCCGGTCGTAGAGCCG 1202667 28 100.0 32 ............................ CTTGCGAGGACAGGTTTTTGCGCTCCTGATGC 1202727 28 96.4 31 ............G............... CTACGGGCGTTAAGACCCGGATAAATCGCAC 1202786 28 89.3 31 ...........C.C.......C...... GATCACTTGAGCATTGAGCAAAGCACTGAGC C [1202812] 1202846 28 89.3 0 ........T......A........A... | A [1202858] ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.9 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCCGAGAGAGCCGACTGATTGGGTAGGATTTATCCGCGAGACGTCATTGCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCTCACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAAGCCGTCATGTCGCAATTTCCGGTTTCTAGCGACATGTTATGAGGTCATGTCGCTGGCGACGACATATCAAAAAGTACGGCGCTGTCTTGCTGCGGGTGAGCACCTGTATACGGCGGACAGGAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGTTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : AAACAAAGCCCTTGTAGCTAGCTCACCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCTTCCGTGAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCACGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCGTGCAAGCGCAGGCGGTCGCCCAGGCCGGTAGCCCTGCCGCTGATAGCGGGGAAGCTGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1212541-1211552 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076668.1 Pseudomonas cichorii strain LJ2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1212540 28 100.0 32 ............................ ATGAACGATGACCACTTCTCCTTGAGTCGCTG 1212480 28 100.0 32 ............................ TTCAGCTCTTCGCTTTCGAGGACGCTTGGCAG 1212420 28 100.0 32 ............................ GATGATGGCTTTGGAACAAGCAGACGAATACG 1212360 28 100.0 32 ............................ AGCATACCGATCTGAACCTAGTGCTTGAGCCC 1212300 28 100.0 32 ............................ TCCATTCGCCCGCCAATGCCATATGCCGAACG 1212240 28 100.0 32 ............................ ACAAACTTGAAGGCATAACCGCCGCCACCGGC 1212180 28 100.0 32 ............................ CAGTGTCACTAGGCATGAGGCCGACTGCTTTC 1212120 28 100.0 32 ............................ TGAGCGGGGGCTTCAAGCCTGTAGGGTACTCA 1212060 28 100.0 31 ............................ GCAACGCTTGCTCAAGCCCTTTCGTCGAAGA 1212001 28 96.4 32 ...........................A ATTTCCCGTACCACTGTCTGCATCACCTCCTT 1211941 28 96.4 32 ...........................A TAAAAACTGGAGCAGCACATGAGCACAGCAGA 1211881 28 96.4 33 ...........................A TGCTGGCAGATCCAAGCGGTGGCTGCGTTCATA 1211820 28 96.4 32 ...........................A TTACAAAACTTGGCTGGCCGAGATACGCCGCC 1211760 28 92.9 33 ......................T....A AGTGGCGATCCAGCCGGGCATTGCCTGTATGCT 1211699 28 89.3 32 ............C.........T....A ATATCGCCATCTTCCCAGTAATAGAAATCCAC 1211639 28 85.7 32 ...........CA..A...........A TACGACCCGGTCATTAATGGTCATCTGCTCTC 1211579 28 75.0 0 A..A.......AAC..........C..A | ========== ====== ====== ====== ============================ ================================= ================== 17 28 95.8 32 CTTCACTGCCGTGTAGGCAGCTCAGAAT # Left flank : GTCAAGAAAGGGTTCATTCTTGGCCACCGTAGACAGATATTCCCGGGGAGTGCGACAGCGCCGTATTTTTTGATAAATCACTTTGTGCAGGGCAGCTTGCTGGCGACTTCAATATACAGCCGCAGAATATCTGCCGCTTTTCAGATTTTTCGCCAGCAAGCTGCCTCCCACAAGTGTTGTGTATGCCTTAACTGATCGGCATTACTCCGTAGCGACTTCAGTAACGAAGACGGTGCTCAACCGACTCGGATGTACCACCAGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATGCGTGCCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTATTTTTTCACCCAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : CACTCAAATCAACCACCCAAAAAACCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGTTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCGG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1213169-1213436 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076668.1 Pseudomonas cichorii strain LJ2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1213169 28 100.0 32 ............................ CGCCCAAGCCCAGCATCGCGCTGGGCCGAGGC 1213229 28 100.0 32 ............................ ATCATGCCCAATCGAGCGAACTCGATGCCCCG 1213289 28 100.0 32 ............................ CATGAGTGGCGAGATCACAGCCCAGTACTCAC 1213349 28 100.0 32 ............................ TACGGCCGAGATCGTTCGCACCGTCATGGGCA 1213409 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 34 CTTCACTGCCGTGTAGGCAGCTCAGAGA # Left flank : GTCAGAATCAGCATTCCGGAAAATGTTTTTGTGCGTCTATTGCTCGCTGTAGATACGGGCACGCATCGGTAGATATTGTCCCTTGCATTGTCGCGGGCAAGCCCCCTCCCACTGGTGGTACATCCGAGTCGGTTGAGCACCGTCTTCGTTACTGAAGTCGCTACGGAGTAATGCCGATCAGTTAAGGCATACACAACACTTGTGGGAGGCAGCTTGCTGGCGAAAAATCTGAAAAGCGGCAGATATTCTGCGGCTGTATATTGAAGTCGCCAGCAAGCTGCCCTGCACAAAGTGATTTATCAAAAAATACGGCGCTGTCGCACTCCCCGGGAATATCTGTCTACGGTGGCCAAGAATGAACCCTTTCTTGACCCTCTTTTTTTCACTATCGGTTCGTCTTTTAAAAATCAATGATTTACAGATATCGATAAAAAAAGGGGTAAACGGCTGCTGGTGCATATTTTTCTTTGAGAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : AAGCTTCACCGCCATAGTCGCGGGCAAGCCCCCTCCCACGGGAGTACATCCGATAGAGTTACATCGCTTGAAGCACTGCTTTCGCGACTGAAGTCGCTCCCACACAAGCCAACTCATTCGCGAAAGGCCTTGAAGGCATCCTGCACAAACCTTCTAGACTTCCCATCCCCCATGCGCGATAACACGCTTCTCTATCCCCTTGTTTGCCCATAAGCCTGCCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCTCATGCCTATGATCCTCACTGGCATGACAGTTATCTGGTGGGTGTGACGGAGCAGGGGGTTCAGCAGTTTCATTGTCGGCAGCAACGTTATGCCAGCACGCCGGGTCAGGTGTTCATGCTGGAGCCGGGTGAGATTCATGATGGGGATGCGCCCAGCGCCGAGGGTTTCACGTATCGGACGCTGTACCTCGACCCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1240244-1239375 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076668.1 Pseudomonas cichorii strain LJ2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1240243 28 100.0 32 ............................ CAGGTGAGCCGCAATCGAAGATCGTGCAACGC 1240183 28 100.0 32 ............................ ATACGACGTCCGCATTCACAGCGCTGGCAAAT 1240123 28 100.0 32 ............................ GATGGTCACGCTGTCTTCTACAGACTGCCGCA 1240063 28 100.0 32 ............................ ACAGCGAATGGACGTTTGCACATCACACCTGC 1240003 28 100.0 32 ............................ TTTACCCACCAAAGAGAACACCCACCATGGGC 1239943 28 100.0 32 ............................ CAGTGACCGGGCGACGACTGCAAAAGCCAATT 1239883 28 100.0 32 ............................ CTCCAGGACACAAGCGGCAGACCGGTAATCAC 1239823 28 100.0 32 ............................ GGCGCTTCCAGGCTTACCGCTGATGTCTTTAC 1239763 28 100.0 32 ............................ ACCGCCAGAACTGGCGGGCTCGGCAGGTGATT 1239703 28 96.4 33 .................T.......... CGTTGAACGAGGCAGTCATAAACCAGGTGATGC 1239642 28 96.4 32 .................T.......... GACCCCACGTACACATTTTTTCCCGTTTCAGG 1239582 28 96.4 32 .................T.......... TGACAGCGAGCAGCGAGCTCTTCGGGATCAGC 1239522 28 100.0 32 ............................ TAACGTGTTGGCTTCTGTCACCGAGGCGTCGA 1239462 28 96.4 32 ......................C..... CATGTATTCATGTCGTAGAACTCGGCGGGCAG 1239402 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CTGCAAAAAACCTTGTTGACCAATGATATGCGCATCCCTATACTTCGCCGCCATTGAGCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCAAACAGCAAGACACCCAAGCGGTTGCAGAGCTTGGGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTGCAGGGGCTGTAGGAGCGAATTCATTCGCGAATCAGCATTCCAGGCAATACATGTCCTTTTAATGTACCGGCCTATCGCGACTGAAGTCGCTCCTACAAGTCCGGCGCCAAACCACGACTTAACGCACCCTCTTTTTGACCCTCTTTTTTCAGACTCCGTCGCCCCCTTTAAAATCAATAACTTACGAGAGCCACAAAAAAGAGGGTAAAACAGCTTCAGGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATTAGGCAAGGTGTCTA # Right flank : ATCCTCGAAGTGCAGGAAGAGTGCGTTGTTGGATTCACTGCCGCACAGGCGGCCCAACCCTCATGCCAGTCAAATCCTACACCACACTTACACACGCCCCACAACCACCTACTCCCCATCCCCTCACCCAAACTGAATCCCCTCATTTTACCAACCCAGCCCCCAAGCTACCCTTCCCGTCATTCGCTGCCCCAGCAGCGACCGGGTTTGGCGACCCGATCTAAAGATAAATTCCCCCATCGCGAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGACTCCCCGTGTACATCCTCCTTCCAAGCCACCCTCTTCCTGCGACACAGCCGCATGCTCCGCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : CTTCACTGCCGTGTAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //