Array 1 42857-41608 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFS01000037.1 Leclercia adecarboxylata strain I1 Leclercia_S84_R1__paired__contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42856 29 100.0 32 ............................. GAAGCGCAGTTGTGGTGCGCGTATCGCGGCAC 42795 29 100.0 32 ............................. GGCGAGACGTATGGCGCGCGTGATCTGGCGTT 42734 29 100.0 32 ............................. CCTTGAGAGACATCCCCATAAACAATATATCT 42673 29 100.0 32 ............................. CGATGAGGAAGAATTTTAATGCTGAGGGGATT 42612 29 100.0 32 ............................. AGAGGTCACCATGCCCCGCAAATCAGACATTA 42551 29 100.0 32 ............................. CAGAACGCCCTTTTTTGCTGAGCCAGGTGTGA 42490 29 100.0 32 ............................. GACTTGTTATGCCGTGGGAACGTAAAAAGAGT 42429 29 100.0 32 ............................. CATGACGTGAAAATCTTCAATTCCCCATCCTG 42368 29 96.6 32 .......T..................... GGGGAATGGGCATTCAAGCGAATGCCGATCAC 42307 29 100.0 32 ............................. GACATGCTGGGCATTATTATCGCCACGCCGGG 42246 29 100.0 32 ............................. TAATACGCAACCTGACGGTCACGCCAGAAACC 42185 29 100.0 32 ............................. TTGTTGGATTTAGTCATAATCTACCCCCACAG 42124 29 96.6 32 ...........................T. CAGGTAGCAGCAGCCAAAAACCTTCGCACCAG 42063 29 93.1 32 ....................AG....... CGAGTAACGCGCCAGCCGTTCCGGCCGCAATG 42002 29 100.0 32 ............................. GCGATGGAGCGAACGTTTTCCGTCCTTGTCAG 41941 29 100.0 32 ............................. ACGAGTAAAACAGCATTATCATCCGGGCAAAT 41880 29 100.0 32 ............................. CGAGAAGGTGAGCTTCACCGATGCGCCCATCG 41819 29 100.0 32 ............................. GTCTAAAAATGGCGTAATTAGTTTCTATTTGG 41758 29 100.0 32 ............................. CGCGCATTAATACGAGCCAAGCAGCGAGGTAT 41697 29 93.1 32 ............C....A........... TAGGATAGTGTGGCGCGGCCTGATACAACGTA 41636 29 82.8 0 ..C........C.T...........C..A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.2 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TCCCCGCGTCAGCGGGGATAAACCGATTACGTGATGGGCCAGGGAAACCACGGACACGTGTTCCCCGCGTCAGCGGGGATAAACCGATCAGGTGGTGCAGTACATAACTGAGAACGTGCGTGTTCCCCGCGTCAGCGGGGATAAACCGTTCAAAATATTTGCGCAAAACCAATCCAGGTCGTGTTCCCCGCGTCAGCGGGGATAAACCGGAAATTAGCTGTTCTCCGCGCCTAACAATGGAGTGTTCCCCGCGTCAGCGGGGATAAACCGATTTCCTCAGCAGCTTGTACGCCATATTTATCGTGTTCCCCGCGTCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCGGGGATAAACCGATTAGCCTTGTTGCAACATACAACGCTGAAAA # Right flank : CGAATAATCTTACTCCGTATAAAAATAAACAGAAAAATGCCCAGGCACCGTTTGGGTGATGCACTTTATCAGGCTTTTTTCCCCGCTTTCGCCAGTTCCTTCACCAGTGGCAGCATAATGCGCACCACGTCCCGGCTGCGGTGTTCAATCCGTTGTGGGAGGGCCTCGTCAATATGCTGCAGATTATCCAGCCTGACGTTATGCCAGCTCGATCCCTGTGGGAAGGCTTTTGATTTTGCCCGCTGCTGATAACCGTCTTTCTTACCCAATGACCAGTTAGTGGCCTCAACATACAGCACCGGGATCCCGGCTTTATCGAAAACTTCACCGTCATTACAGCATCCGGTGCCTTTCGGGTACGCGGCGTTACCTCCCGGGTTGGTCGCGGCAAAAATCCCGTGGGCGCGGGCAATCGCCAGCGCGCGGTCGCGGGTCAATTTACGCACCGGGGCAGGGGTGGTTTTTCCGCTGTTAAAATAGAGTTTATCGCCCACGATTAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 44645-43087 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFS01000037.1 Leclercia adecarboxylata strain I1 Leclercia_S84_R1__paired__contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44644 29 100.0 32 ............................. GAATAGCGCTCATCGCGGCTGGCGTGATGGGC 44583 29 100.0 33 ............................. TTCGGTTGCTGGACGAAAACGGGAAACCCGATC 44521 29 100.0 32 ............................. CTCCCGCAATACGGGCAAAGCGGGATAGTGCC 44460 29 100.0 32 ............................. TCCGGGGAGCTATGCTCATTGGAGTCGCAGAA 44399 29 100.0 32 ............................. TTAACCCGCCTAATTTTGATGTAGAAAGAGAT 44338 29 100.0 32 ............................. CACCTATATTACCGGACCACCCTTTGTATATT 44277 29 100.0 33 ............................. CCCTGTACGGCCTGCGCCTTAACCTGCGCAAGC 44215 29 93.1 32 .............T..............T GCTGATTTCCCCCGAGTGCGCTCTATGAGCGC 44154 29 100.0 32 ............................. CCAGGGGCGGCTAAACATCACTGGCTATGGGT 44093 29 100.0 32 ............................. CAGATGGCAGAACGGGCGATGGGGGATCTACA 44032 29 100.0 32 ............................. CTCACGCAGTCGCAGCTGGCCAGCTCGCCAGC 43971 29 100.0 32 ............................. CCAGGTGAAGACAACGACGACAACGCACCGTG 43910 29 96.6 32 ............................C GGTTGTTCCCGGATTCGTCCCTACTGGATCAC 43849 29 100.0 32 ............................. CATGAAAGCACGACCACGGCAGCGAATTTGGC 43788 29 100.0 32 ............................. CTTCCCACATCACGCGACGCGCCGCCACGTAA 43727 29 100.0 32 ............................. CGCTCCCAGACATAGACGGCAAATGTTGGCAT 43666 29 100.0 32 ............................. CTAAATCACTGGCGACAATGGACAGCTTTGTG 43605 29 100.0 32 ............................. ATTTAAAGGATAAAAAATGGCTGAAATAAACA 43544 29 100.0 32 ............................. AAACCAGATCCCACGCCCCCTTGCCAACTTTA 43483 29 100.0 32 ............................. CAATTCTTGTTGAATCCGGCTTTAGCGCTGCG 43422 29 100.0 33 ............................. CCTACGGGCACCGGCTGTCGCGCGACGCCGTGC 43360 29 100.0 32 ............................. ATTACGTGATGGGCCAGGGAAACCACGGACAC 43299 29 100.0 33 ............................. ATCAGGTGGTGCAGTACATAACTGAGAACGTGC 43237 29 100.0 32 ............................. TTCAAAATATTTGCGCAAAACCAATCCAGGTC 43176 29 100.0 32 ............................. GAAATTAGCTGTTCTCCGCGCCTAACAATGGA 43115 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTTCTGGCTGCCGGTGAGATTGAGCCGCCGAAGCCTGCTCCAGATATGTTGCCCCCCGCAATCCCTGAGCCTCAACCGCTGGGGGATAGTGGCTATCGGGGGCGCGGCTGATGAGTATGGTCGTTGTGGTCACAGAAAATGTACCGCCGCGTTTGCGAGGAAGGCTTGCCATCTGGCTACTGGAAATCCGGGCTGGCGTATACGTTGGTGATGTCTCAAAACGCGTGCGGGAGATGATCTGGCAGCAAATCATCCAGTTGGGTGGGGTTGGAAATATCGTTATGGCCTGGGCGACAAACACGGAATCAGGTTTTGAGTTTCAAACCTGGGGGGAAAACAGACGCATGCCGGTAGATTTAGATGGGCTGAGGTTGGTTTCCTTTATTCCTGTTTAAAATCAATAATTTAATAGCTCTTTAATAATGTGGAAATGTTGGATTAAAGTTGGTAGGTTGTTGGTTGCTGAAAATTTCGATTAAAAACAGTAAGATAAGGTTAGT # Right flank : ATTTCCTCAGCAGCTTGTACGCCATATTTATCGTGTTCCCCGCGTCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCGGGGATAAACCGATTAGCCTTGTTGCAACATACAACGCTGAAAAGTGTTCCCCGCGTCAGCGGGGATAAACCGGAAGCGCAGTTGTGGTGCGCGTATCGCGGCACGTGTTCCCCGCGTCAGCGGGGATAAACCGGGCGAGACGTATGGCGCGCGTGATCTGGCGTTGTGTTCCCCGCGTCAGCGGGGATAAACCGCCTTGAGAGACATCCCCATAAACAATATATCTGTGTTCCCCGCGTCAGCGGGGATAAACCGCGATGAGGAAGAATTTTAATGCTGAGGGGATTGTGTTCCCCGCGTCAGCGGGGATAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //