Array 1 99757-98507 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANHR01000062.1 Salmonella enterica subsp. houtenae serovar 16:z4,z32:-- str. RKS3027 contig000094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99756 29 96.6 32 ............................C CAGCATCGCCAGGATACGCGCGCCGTGGATAT 99695 29 100.0 32 ............................. GATGGTGAGTGGCCCATCGATAACGGTGTCAT 99634 29 100.0 32 ............................. GACACGCTCAACCGCAGCGCAGGCGAAAGCAA 99573 29 100.0 32 ............................. GAGATTAACGCGGCTAATGACCGCCAGAAAAA 99512 29 100.0 32 ............................. TAAAGTGGGGCATCTGGAACGTCGCGCCCCAT 99451 29 100.0 32 ............................. CTGGCGGTGAATAAACAGCGCGAGTGGCCTGA 99390 29 100.0 32 ............................. GCCGTGGCTCTTGGTGCGACGCTTTCAGAAAA 99329 29 100.0 32 ............................. CGCTATGGCGATATTGCCGATGCCATGCTGAC 99268 29 100.0 32 ............................. CCCAGCTCCAAAAATATTGGGCGGGTGATGAT 99207 29 100.0 32 ............................. TGCTTATATTGGAAACTAAATGTTATCCAGTG 99146 29 100.0 32 ............................. GAGTGCGGAGATGGTTGACCTTGGGGATACGG 99085 29 100.0 32 ............................. AACATGAGTTGCTGGCGTTGTTAAAATTTTGT 99024 29 100.0 32 ............................. TGCGCCGCCAGATGCCATTTGCAACCGCATCG 98963 29 100.0 32 ............................. GTCACACGTCGCCAGACGCTTGCGCGATTTCT 98902 29 96.6 32 ............................A GAATTGAACAGAGCGATAACCGCCGCCAGCGC 98841 29 100.0 32 ............................. CAATACGGCTGGACGGGGTTTGATTCGTTAAC 98780 29 100.0 32 ............................. GTATTTAACCCAGGATTCACACTCGGCCATTC 98719 29 100.0 32 ............................. TTGGATCTCGCTAATGATCATGGCGCGGAGAT 98658 29 100.0 33 ............................. GCTCGATGAGGCGTTTACCTGCTGGTATCAGGC 98596 29 100.0 32 ............................. TTTCTGCTGTGTGTACCCGAGCTCTTTCCTCC 98535 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATAATGTCCAGCGCTTCGCGGCGTTGCTGTATCCAGTTTACGCTCACGGTACGTTGCATTTCCGGGCGCGCGGCAAGCGGTTGCTCCAACAGACCGGAGGAAGAGAGATGGCTTAACCACGGGTAACCCGCGTTATCGTTGGGGTCTGCGGCGGCGAATCCTGCGCCATTATTGAAGGCGTCGAGTAATTTTTCCCGCAGGGCTGCGGGCAGCGTGGCGCTTAAAATAATCGCGCTACCGCCCTGGGCGGCATGGAAACGCAGTAGACCTTCCAGCAATTTCACCATATAACCATCGTAAGCGTGGACTTCATCCAGCAGCAGGATCTTGTCCCTCATTCCCAACAGGCGGAGCGACTGGTGGCGAAAAGGCATCACCGCCATTAAGAGCTGATCCAGCGTACCTACGCCAACCTCCGCCAGCAGCGCTTTTTTGCGCGAATCGGCAAACCAGGCGTGACACTCGCTGGCCGCGTTGCCGTCATGATGCGCGTAATCTT # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //