Array 1 59113-61248 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTOR01000001.1 Escherichia coli strain MOD1-EC6191 MOD1-EC6191_1_length_570854_cov_60.642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 59113 28 100.0 32 ............................ TGCATGTAGCGCCACGCCGTGACCACCGTCCT 59173 28 100.0 32 ............................ ATACAGTAGCGAACAACTGGCAAGGGGGGCTA 59233 28 100.0 32 ............................ TGATGAAAGTATCCTTTGCCACGTTTTTCCTC 59293 28 100.0 33 ............................ TGGACGCTGATGATCTGAGCGACGAGGAAAAAG 59354 28 100.0 32 ............................ CCGACAAGTAAATCCTGTGCGCCATCCTGCGG 59414 28 100.0 32 ............................ TGAATCCCGGAAAGAAAATTTTGCAAATCAGG 59474 28 100.0 32 ............................ CCGCGTCATCCACCGCCAACGCTGGAAATTCC 59534 28 100.0 33 ............................ GTATACGGCACATTTATAGACCCCGAGCAACAG 59595 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 59656 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 59716 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 59777 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 59837 28 100.0 32 ............................ GACACCGGATTACCCTGGTCAGCCAGGAATGT 59897 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 59957 28 100.0 32 ............................ TTCCCTGCCGGTTCTCTGTATCCATGAATATC 60017 28 100.0 32 ............................ CAGATATCGTGCCGCACCGATCGTGACGAGCA 60077 28 100.0 32 ............................ ATACCGCCATCAAGTGTAATGCCCTGATCCAT 60137 28 100.0 32 ............................ ATGTACGCGAGATACGCGTGATAGAGATAAAC 60197 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 60257 28 100.0 32 ............................ ATCAACATGACACCCGATTGTATTCAGGAATT 60317 28 100.0 32 ............................ GGTCGGTGAATCGCTGCATCGCGGTTCATATA 60377 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 60437 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 60497 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 60557 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 60617 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 60677 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 60737 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 60797 28 100.0 32 ............................ CGTCATGACTGCATTACCGACGCCGAAAACTT 60857 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 60917 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 60979 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 61039 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 61099 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 61159 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 61219 28 85.7 0 ....................A...C.CT | T,C [61239,61243] ========== ====== ====== ====== ============================ ================================== ================== 36 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 70307-71215 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTOR01000001.1 Escherichia coli strain MOD1-EC6191 MOD1-EC6191_1_length_570854_cov_60.642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 70307 28 100.0 32 ............................ ATTTGAGCGACGTAGCGGAAAATACGATCGCC 70367 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 70427 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 70488 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 70548 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 70608 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 70668 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 70729 28 100.0 32 ............................ AATCTGGATGCGCTGGTGCTCGCCGTTCGTCG 70789 28 100.0 32 ............................ GCATATGAGATGAGCGAGCGATAACGCCTTTA 70849 28 100.0 32 ............................ ACGCCCAGCGACTGACACCGATTGTGGTCCCG 70909 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 70969 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 71029 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 71089 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 71188 27 85.7 0 ...G...A...............-C... | T [71208] ========== ====== ====== ====== ============================ ======================================================================= ================== 15 28 99.0 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //