Array 1 155709-157658 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRNG01000018.1 Pseudomonas aeruginosa isolate 250, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 155709 30 100.0 35 .............................. GCTACGTCGGCGTCACTTCTGGCGAGTACAAGCGT 155774 30 100.0 36 .............................. ACATAAGGCGGTGCATGTAAGTGGAGACAGGGCGGT 155840 30 100.0 38 .............................. CGCAAGCCCCCCACCGACAACTCCAACGCCTACGGCGT 155908 30 100.0 37 .............................. TGCTCCATCTGATGGTGCTGCTGCGCCAACTGCTTGT 155975 30 100.0 36 .............................. TTCGCGGGCTCGCCCATCTTCGGCTCCTGAGGCTGT 156041 30 100.0 37 .............................. GGATGTGGAAACGCATTTCACGGCAGAAAGTACGAGT 156108 30 100.0 36 .............................. GTGACCTCGGCAGGGGCATTGCCAGTGAGCAGCCGT 156174 30 100.0 36 .............................. GATCCCGGCACCCTGATCAGCGCGCAGCTCGAACGT 156240 30 100.0 36 .............................. ACGGGCAGCGGTAGCACCGGCAAGGCAGCGGTACGT 156306 30 100.0 37 .............................. GCTGCGTTCCGCAACGAAGATGTGCCTGGAGCCGCGT 156373 30 100.0 35 .............................. TTGCCGCAAGACAAAATGACGGCATTCTCCCGCGT 156438 30 100.0 36 .............................. ATCGCGGTCACGCGGCCGACGATCGTCGTCCCGTGT 156504 30 100.0 36 .............................. TCGTGCTCGGGCTTGAACGACTTGTAGACGTAGCGT 156570 30 100.0 36 .............................. ACCATCGCCTCTTGGCCAAGCCCTGCAGAAACCAGT 156636 30 100.0 37 .............................. ATTGCCGGCTCCGGCATGTGCCAGAACTGTGACGCGT 156703 30 100.0 36 .............................. TGAAAGAGCCAGGGTGGTTATGGTGATCCTGGCTGT 156769 30 100.0 36 .............................. TGCGGCGTGTACATGTGTCCGTACAAAGTCCTAGGT 156835 30 100.0 36 .............................. TTCACCGTCTGGTTGAAGTCCACGACCGGGATTGGT 156901 30 100.0 37 .............................. GGCCCAAACAACGAGCCGATCCGCACGCCGCGCTCGT 156968 30 100.0 37 .............................. AGTCGTCCATGCTCCGCCCTGGCGGGTTGGAAGCAGT 157035 30 100.0 36 .............................. AACCTGCCAGACCTCGATGCCGTTATCCAGGGATGT 157101 30 100.0 36 .............................. AGCAGTTGATCAGTTCCGGCGCAGTAGCGGCGACGT 157167 30 100.0 35 .............................. TGCGGGATCGCCCAGGCAGTAACGCACTTCATGGT 157232 30 100.0 37 .............................. GCCCAGCTCACCGACAGCACCCCGTAGACCTTGGCGT 157299 30 100.0 36 .............................. ACCACCAGGGTCTCGCGCGGCAGGCCGAGCACAGGT 157365 30 100.0 36 .............................. GCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGT 157431 30 96.7 35 ............C................. AGCTCGCTGACGTCGAGGATGCGGCGGTGGAAGGT 157496 30 100.0 36 .............................. AGCTCGGGCATGCCCTGGACACCATCGATCCATGGT 157562 30 96.7 37 ...............T.............. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 157629 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 99.2 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTTATTGATTTATATACTCTTTCTTTGAAGCTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : GATAGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGTCGAAAGAAAGACTAGGTTGCGCTGCTCGTCACACATGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCAAGGGGCGGTGAAGCCCCTCGGGGTGTAGTCCAACTGGTGCAGGGGAACGTAGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCCCTTGGCCGATCAGGAAGACCTGGCTGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGTTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGTCGGCGATGCCGTTGTTGGAAAGTTGGTCCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33358-34404 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRNG01000009.1 Pseudomonas aeruginosa isolate 250, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33358 28 100.0 32 ............................ ATCGCAGGACAGGGCAGAAATCATCAGGAAGC 33418 28 100.0 32 ............................ GCATTGGGCAGGCCGACCAGCTGATCGATACC 33478 28 100.0 32 ............................ GAGACTTCAAGACGTTCCGGCGCGGCCGGAGC 33538 28 100.0 33 ............................ ATTGCGCCAGATCCCGAAAGCTCTACCCGAATC 33599 28 100.0 32 ............................ CGTGATGGGCGCCAACATGCCGTCGACACTCC 33659 28 100.0 32 ............................ TGAATGCGAAACTTCGTGCTGTAGCTACCCTC 33719 28 100.0 32 ............................ AACTGCTCGGCGGGCACCAGTTGGCGGTCGAT 33779 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 33839 28 100.0 32 ............................ TGGTTACAGGCGGTCTGGATCGACGCCGGGCA 33899 28 100.0 32 ............................ TCGTCAATCATCGCGGGGTCCCAGCGATACAG 33959 28 100.0 32 ............................ GTGCCGCTGGCGTAGTTGACCGCATCGACGCG 34019 28 100.0 32 ............................ TCTTGGGAGTCCCGGCAGGTCAAGGGCCGCGA 34079 28 100.0 32 ............................ TCGAAAAGATCGCCCAGGAACACGCAGCGCCA 34139 28 100.0 32 ............................ GACAAGGACCGTCGCGACAAGACCGAACCCGA 34199 28 100.0 32 ............................ AACAGGCATTCACTGGGTCGTCATCGACAGCC 34259 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 34318 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 34377 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAAGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 44697-42929 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRNG01000009.1 Pseudomonas aeruginosa isolate 250, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 44696 28 100.0 32 ............................ TGCAAGTCGATCTGCCGGACGCTTAATTGCAG 44636 28 100.0 32 ............................ GAATCCGCCGAACAGTTCTGGCCGTTTGTCTT 44576 28 100.0 32 ............................ TATTCGGTGAACGATGGCGGCGGGACGAATCG 44516 28 100.0 32 ............................ GACGACGGCGACGCGCTGAGGCTGGCTGTGAA 44456 28 100.0 32 ............................ CAGTCAGAGGGGAACGACCCGGCTCCGGCAGA 44396 28 100.0 32 ............................ AATACGTATAGGTCGGCTCCAGTTTCATTCTT 44336 28 100.0 32 ............................ ACATGCGACCACCATCGAGAGGAAACGTGCTA 44276 28 100.0 32 ............................ TTAGGCCTTCTTAACGCCGCGCTTGCCCAGGT 44216 28 100.0 32 ............................ AGCATGTTAGCCGCCTCCGCTGGGATCATTGC 44156 28 100.0 32 ............................ ACTTACCGGGTAGCTGTACCTGATGACGTACT 44096 28 100.0 32 ............................ AAGACCAGCGAGATCCTGGTCAGCCACCTGGC 44036 28 100.0 32 ............................ ATTGCTGGGAGACGTATTCGGCCAGTGTCATG 43976 28 100.0 32 ............................ AGCACGGCATTGCGGAAGTCATCGGAGCCAGC 43916 28 100.0 32 ............................ TTCGGACACCAGCACCACGCGTGACGTCTTGC 43856 28 100.0 32 ............................ CACGTGTCCAGCCGACACTAACAACCCTGGAA 43796 28 100.0 32 ............................ TACGGCCTGCCGAACAAGCCATTCATCCTGCA 43736 28 100.0 32 ............................ GCCAGGTGCGCGCGCGATGACGGTGAGCCTTC 43676 28 100.0 32 ............................ TTGACCCATCCCAGGATGTAGCGGACGACCGG 43616 28 100.0 32 ............................ TACGGACCCGACTGATCCTAAAGACCCTGGTG 43556 28 100.0 32 ............................ GTGACGGTCACGCATGCGCAGCATTTTGAAGC 43496 28 100.0 32 ............................ ACCTGCGCGTCGTGCTGGTCCTTGAAGTAGTT 43436 28 100.0 32 ............................ GGCTTGTCTGGGAATCGTGCGCGGTCTTCGAG 43376 28 100.0 32 ............................ TACAAGTTCAAGCGCGACGGCAAGGAATGGGA 43316 28 100.0 32 ............................ GACAAGAAGCTCCAGGGCACCGGCGTGAAGAT 43256 28 100.0 32 ............................ GGTGTCCTCAACGCGAAGCTGACCGAACTGAA 43196 28 100.0 32 ............................ ACCCAGCGCCGCCGGGATCTTCTCCGCCACCT 43136 28 100.0 32 ............................ TGATTCAGGAGTGCTGGCAAGCGGTTACAGCG 43076 28 100.0 32 ............................ AGCAGCGGCTCCAGAAAGAGGGGCGCTGCCTG 43016 28 96.4 32 ..C......................... TTCGACGCCGCCAGGGTTGCCGCATCGCCGTC 42956 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 30 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 236379-237187 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRNG01000041.1 Pseudomonas aeruginosa isolate 250, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 236379 28 100.0 32 ............................ GCTTCGTCCTCGTCCATGGCGCCGCCCCTGGC 236439 28 100.0 32 ............................ TCTACCGTCAGCGGCAGGCGGGCAAGGCACCC 236499 28 100.0 32 ............................ TACCCGAATACGACTTGCGCGAGGAAGACGGT 236559 28 100.0 32 ............................ AGCATCGCATCAAATCGTGCAGAACACGATAA 236619 28 100.0 32 ............................ TGGTCGAGCAGTTCGGCAAAGGGGCCGTGGTT 236679 28 100.0 32 ............................ TTCACCTGGTCGCCGGCCAGGCTGATCACTGC 236739 28 100.0 33 ............................ TACAAGGTCATGGCGCTCGGCAACGTGGTGGAA 236800 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 236860 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 236920 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 236980 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 237040 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 237100 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 237160 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGCACTCGCCTGGGAAGGCGAAACAAGAGGTCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCACGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //