Array 1 68332-69621 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDW01000058.1 Levilactobacillus zymae DSM 19395 NODE_165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 68332 36 100.0 30 .................................... GACGCCGACACCATTAGCGCCATTCAAGCC 68398 36 100.0 30 .................................... AATCCGGTAAGAACATGGCCCGCCCGCAAT 68464 36 100.0 30 .................................... AAGGACGACCAACCCGACGACGCGGCCATC 68530 36 100.0 30 .................................... AACTGGTTCTCGCGGCCGTAAGTGCCAGTT 68596 36 100.0 30 .................................... GGCCACCGTGGCCCGCGGGGCGGTAAGGCC 68662 36 100.0 30 .................................... CAATTTCACCGATAGCCAAAACCCACACTA 68728 36 100.0 30 .................................... AATGTCGGGATGTTCCTTGCACCACACGGC 68794 36 100.0 30 .................................... GGGCCTATGCCAGTCAGTCCGGCACGTCTA 68860 36 100.0 30 .................................... TTTGCGGAGTATCGCTATAGCGGCAAGTAC 68926 36 100.0 30 .................................... GTCTTCGTCGTCCATGATGTCCAGGGCGGT 68992 36 100.0 30 .................................... GGTCGGTGGCGTCATTGGCGATGACCTTAG 69058 36 100.0 30 .................................... GATCGTGATTTCCCAGTCTTCCAGCGGGTT 69124 36 100.0 30 .................................... ATGAAGATGATCGGCACGGTCAGGCCACCA 69190 36 100.0 30 .................................... GCCGGGGACCCGTCCACGCTACAGCCTGAG 69256 36 100.0 30 .................................... AGCGATTGAACCTAGCTATTCGGGTCTCAA 69322 36 100.0 30 .................................... GTCACGGCCAAGTGTAACCGGCCGGTGTCC 69388 36 100.0 30 .................................... ATGACAACAACGACCATTGCCGTCGGTAAC 69454 36 100.0 30 .................................... GTACGAGCCCCCACTGGGTGACGAACTCGT 69520 36 97.2 30 A................................... GTAAAACCGCGCCCCTTGCAAGGCGCGCCC 69586 36 72.2 0 .C.....................A.TA..T.CGCAT | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 98.5 30 GTTTTAGATGAGTGGTAAATCTAGAAGGTCAAAAGC # Left flank : GAGTTGGATTTAAATGCGGTATTTCAACGGAAACTGCAGGTACAGTTGTTGAAAGTCTTGTCTGACCAGCAGACGGTTCAATTGACGGATCAAGTTCAACAATTATTGACACAAATTCTGGGGGATAGTTATGTTTTGGATGTGCCGTTGGGGATTCCGGAGACGCCCGAACTAGCAAAATTAATGAAATTCAGTGGTCTCAAGATTGACGGCATAGCCGATATGGGGATTCATGGTATACTGGAAACGTTAATTAAGGTATTAGTTGAATTAAACGATCGGCACACGGTCGTGTTGACCAATGTTAGCCACTACTTACAGGTCGCTCAATTTAAATTATTGAGTAAAGCGGTGGCGGACGCAGGTTTACCACTCCTTATCATTGAATTCTCAGAAATCCGCCGTCAGCAAGTATTTGAAGATTGTGACTATCACTACATCGATAGTGACTTTGTTCTCTGGTAGCTGATTTAGTATGAGAGAAGCATTATAGAACAATG # Right flank : TCAATCACAAAGTCTTAAAGTAGTTCTAACTCTAGACCAAACGAAAGTCCCGCACTTCAAAATCGGTGCGGGACTTTCGTTTGCTCTAAAAATCTAACTCGGTTGATACGCCTGCGCCACCTCTTCGGCCGTGGGGTAGGACTTCTGCGTCCCACGCCGGGTGACCGTTAACGCCGCGTAAGCGTTGGCGTGGTGCAGCGCGGTCGGCACGTCCTCGCCCTGGGCGAAGTAGTGAGCGAATGACCCGATAAACGAGTCGCCAGCCCCGGTAGTGTCCACCGCCTGGACCTTGACGGCGTCGATCAGTTGGCAGTCGTTGGCGCAGACCCACAGCACCCCCTTGGCACCCAACGTGACCAGCAAGTTTTTGACACCCAGGTCAATTAGATGGTGGGCGGCGGCCTTAATTTCGGTCAGGGTCGTGGTCGGCATGCCGGTCAGCGTCGCAAGTTCCGTTTCGTTCGGCGAGAAGAAGTCGACCCGACTGACGTGCGCCAAAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGAGTGGTAAATCTAGAAGGTCAAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 136213-136363 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDW01000013.1 Levilactobacillus zymae DSM 19395 NODE_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 136213 29 96.6 32 ............T................ ACCTCTATGAAGTGATCTGCGGGTGTGCATAC 136274 29 100.0 32 ............................. GGCCATGAACGCTTCCTGTGGAATATCCACGC 136335 29 82.8 0 .............A........GA.AC.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 GTATTCCCCACACGTGTGGGGGTGATTCC # Left flank : AAACTACCATGAATATATACCCAGCTGCGGTGGCGCTTCCAATTTCCCCGAAGGGCCTTGGGCAATGTTGAATAGACCTTTGCATTTGCGGTAACTGGTGTGGTTACTAGGATTAAACTAAGTGAGAGCATTCCTAAACCGATTGTCAAAATTTTTTTCATGTTAGTACCTCCAAGTTATGTACAGTTAAAATATTATCACTACCGGAAATGATATAGTAGATTTAACATTTAAAAAATTGTTTATATTCAGAATTATAAGTTTGACTAGTGGTTCATCAGATCCCCCGGATTATACTTGAAGTTTTTAAAACAGATAAGAAATCTATTTAACATAACAAAAATTATATCAAGTTAAAATTGAATTTGCTCAGGATAGAGTTCAAGCTTGCAAGCGTTAGGCGAGCTTAGTAAACTGTACTTAAAAGCGTTGCTCTGATCAAGTTCATGTAAAACCGAGAATTGTGAATTTTGAAATGCCGGTATGATGGGATTTCTTTA # Right flank : CTAATTGTTATTATCATCCTGCTCGACGCAGATGGTTTCAGATAATTGAGTGACTGAACCCTCCGAACGGGTTGAGTGTCTAACCATGGCCCACCTTAACTAAGCTCGTTATAATGATCCTAATGTAACGGCGAACTTAGATTAGGGGGGAGAGCCTATGCTGGGGTATGTTCTAGGTCGTGATGGGGATATTCACGACTTTATTGAAACCTTAAAACGGGTGCACGGTGAGCTAGAGTACGATGAGATTCGACTAATGCGCGAGTTGATCGAGCTAACGGCCCATCCGGGAAACGTTGTTAACATGGCCGAGAAGCTCAATCTAACCTCCGTCGAGTTGAGTGACTATCTGCAACATCTCCGAGCCTGTGGGTTAATTGACTATTGGTCCGAAAAGTCTTCCAAACCGTTAAGTAAGTCTGTTATCTGAATAGAAAAAGGGCCGCCGTTCGCGTGAACAGCGGCCCTTTGTGGCCTTTCAATGTCGATGAATTTCTAGT # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 6839-6441 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDW01000014.1 Levilactobacillus zymae DSM 19395 NODE_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 6838 29 100.0 32 ............................. TTCCGGCCAGTGCCTTACCACGCAGCATCATG 6777 29 96.6 32 ............................C GGTGCATATCGACCAGTGTTCTGATCCACATA 6716 29 100.0 32 ............................. CAGGGATAGGCGTCCGCCCTTAGTTGCGACAG 6655 29 93.1 34 ...C........................C GAACGTGTATTGGGTGACGCGGGCGCTCCTGCTA 6592 29 100.0 32 ............................. GAGGAGCTGACACCGGCTTATCTCGTTCAGAA 6531 29 93.1 32 .....................A......C CAGCTCGGCGCCAGATGCTATCTGGCTAACTG G [6517] 6469 29 72.4 0 .....T.......C......CA.C.AAA. | ========== ====== ====== ====== ============================= ================================== ================== 7 29 93.6 32 GTATTCCCCACACGTGTGGGGGTGATTCT # Left flank : CCTTTGGCGAAACGCCGCGTACTGGTTGCATTCCGAAGACACGGACCGGCTTCACGCTGAGAGTAACCTGATTGAACGGCAAACGGCGAAGGCGGCCATTAAGACCTTGTCGCAGTATCTGTCACGCACGGACGTGGACGAAACGCAGTTCGATAACCAGGCGATTTATCACCTGATTGTCCACTACCGTAACCGGATCGAGCGGGCCAAGGCGGCCGCCGCACCGTCACACGAAGAGGAGTACCAACACCAATTCAATAAATTGCGGGTCCGGGCGTTGAGCGCCGAACGGACGGGAATTCAGAACTTGCTTGAGGCGGGCAACATTTCCTGGGCCATGGCGTCGCGCTTACGGCAATACGTCAACTATGCGGAAAATGTGTTGGTCATGTCCTTGAGTAGTGACGAGGGCGATTAACGGGTTGAACCACCGTCGGCAAGTTAATAAAAAACGGCGATTGGTGCAATCCTAAACGTTGTTAAACCGGGATTCGTTTAGT # Right flank : AGCACCAAAAAAGAAGCCATCAGCGAAATTATTCGTTGGTGGCTTCTTCGTTTGTCATTTAAATGGTGGTGGGTTTCTGTGCGGTCATAATCAGATGTAAGATCCAATAACAGAAGAGCTGGATGAACGTCATCAGAATCACGAATATCCATAAATCATTCGTCCACATGTTCATTAAGGGCCTGATGAATTGTTCCGGATTTAAGAACAGGTAGATGGTATGGATGCGGAGGAAGCGGCCGATGTAGACCCCGACCGACGATAGGAAGGTCAACGTCAAAACCACGAATAACCGGACGATGTTGTTTCCACGAGCCAGCCGCTCCGAGATGCTTTGACTCACAAAGTTGAGACTCCAGAAGCCCAGGAACGCACAGAACAGGGCGCTGGTAATCAGGTAAGTAAAGTAGATCCAGATGTGAGGCGTGACCCGCAACAGCCCGCTGACCGCGTACGGCTGAAGTAGCGATAAGTGGAACAGGTCGGTCAACAGGTACGGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 73366-73032 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDW01000021.1 Levilactobacillus zymae DSM 19395 NODE_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73365 29 100.0 32 ............................. CATTGTTCGGTTCTTGGAATCCATCACCACTA 73304 29 100.0 32 ............................. TACTTCATGCTTGCTCCTCCTCGTGAATCTAT 73243 29 100.0 33 ............................. CAGATGGGGCCGCCGCCATTTTAGCAGGCGGCC 73181 29 96.6 32 A............................ TGGCGTTCTAACTGGTGCGAACATCACGCAAG 73120 29 100.0 32 ............................. TATACAAGTATAAAAGTCTAAACACTGCCGCC 73059 28 82.8 0 A..........T....A.....-...A.. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 96.6 32 GGTATTCCCCACACGTGTGGGGGTGATTC # Left flank : GTGAGTCCATTGTGATGGCTTCCTTTCATAAACGAGAAAAATTTAGTTACCGTAGCGTGTACTTTACTTTGGAAGGCCAAGAAGAGGATACCGACCGACCAGGGCTAGACCGAATTTTAGTATCGGTTCACTACGATACTGATGAAACACGGCAAGCTAGCCATGATTTCATGGAGTTCGCTGAGAGGACCTGTCCGGTAATGGATAACTTGACCAATGCCGTACCGATTACCCGCACGGAAGTCACTACAGAGACATCCAGTCGAGAAACCATTGAAAGCTAGAGCATGAATTAAAAAATGCCGTTTGATCGTCTTGATCAGCGGCATTTTTGATGGGACTAACATGAAAGGGGTAGCTTGACTGAGCTTAAAGCTATAGCTAAATTTGTAAGAGATGTAAATTGAGATGAGAATTGAAACCATGTAGAATAAAAATGAAAGTTAACGAAAAGTGAGTATTTTATAATCTATAAACACTGCTACAAAGGGATTCGTTTA # Right flank : CATAAAAAACACCTATGACATGCCACTAAATCGGCAGTTCATAGGTGTTTTTATCGGTCTCATTGCGGCCAAGCCTGACTCATCATCTCGAGTACCGGCGCTACCCGTACCCGTTCTGTCTTCAAATAACTCCCGTAAATCGGCATCTGCGCGATGTCGTCACTGATGGGGATGCGGACGCGGTTATCGTCTTGGCTGACCGTCGGGGCGTTGGGGTCTAGGGGCGAAAGATTCGTACTGAAGTAGGGAAAGTCGGCGTATTTGGTAATCTTGGTAAAGGCGTCACGCTGGGCTTGGTACATGAACTGCGCATCGGGAATTTGATCCTGGATAATGTCGCGCCAGATTCCAATGTCTTGGAGGACCAGGAAACTCAGGCCGCGTAATTCTTTAAATTGGATCGTGGGTTGGTTGGCGTGGTACATGAATTGATCCAGGTTAACCGCTAGGCGTTCGATGCCCAAGTAGCGCGATTCCACGGTGTTCGTCAGGAGTTCTTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTATTCCCCACACGTGTGGGGGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.60,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 76413-76748 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDW01000037.1 Levilactobacillus zymae DSM 19395 NODE_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76413 29 100.0 32 ............................. GTATCGTCGATACGCTAGCTGTCCTGGTGTCA 76474 29 100.0 32 ............................. GACCGGGGACCAAACGGACTATGCTAGGGCAA 76535 29 100.0 32 ............................. CCCAGTGTCTTTAAAAATCTGTTTTGCGGAGA 76596 29 96.6 32 ............................T TGTACCTACTTGACGTTTTATTTTCAACCAGA 76657 29 86.2 33 .............A..........GAC.. TTATCATTGGTCTATGTTTGTTGTACATGGCTT 76719 29 89.7 0 A.......T...................T | A [76737] ========== ====== ====== ====== ============================= ================================= ================== 6 29 95.4 32 GTATTCCCCACACGTGTGGGGGTGATTCC # Left flank : TCGGCTTTTTCGTTGCCTTCCTGCCGCGATTCATTCCGCTGATGCTGTTTACCAAGCGTGAGATTCCAGAGTGGTTTAACGAATGGATGAAGTTTGTCCCCGTGTCGCTTTTCACGGCTCTGGTAGTCAAAGATGTGTTTATCGACAGTAAAAGTTACCAGCTGATGTTCACCCAGGTGCCAGAAATGTTGGCCGCGGTGATCGTCATCATCATCGCGTACCGCACGCGCTCAATGGCGCTTTCCGTGATTACGGGACTGATTGGCGTGTTTCTGCTGTCGATGGTGATATAAATAAATTTAGTAAATCCGTTATATCGGCATCATCCACTCTCCTGAGAGAAGTGGGTGATGCCTTTTTTTATTAAAAATGTAATTAATGGGGTATTCGTATCTTTGATTGAAAATAGAGCGCATTGCAGGTACAATTAATGAAAACAAGTTAATGCAAAACTGCAATAGACGAGATTCAAAATGCTGCTATGACGGCTTTTGTTTAGT # Right flank : TCATTGATTGCATTAGCTGAAATTATTATCGGTCTGTGTCTGCTGTATATGGCCTTTTCTGTACTAACTGGTCATTAAAAAGCTTACCCACTACGCTGATCAGACGTAGTGGGTAAGCTTTTTTATGATGTTACGGTCCGCGGCCGCAACTAGTTTATCGAGTTAGTCAGTTACTTTATCCGTTTCGGCGTACATGTAGTCCCGCGTCATCGGTAACATCCGGGCGGAAGGCCCCTTGGAAATCAAGTATTGAATTACGTCGATGTTACCGGACTTGAAGGATGCTGCACAGGCCTGTAAGTACAGGTCCCACATGCGGACAAACTTGTCGTCGAACATCTTGGCGACTTCTTCGCGGTGTTGATTGAAGTTTTGATCCCAGATTTCCACGGTCTTTTGGTAGTGTCGGCGCAGGGGTTCCATATCATCGATTTGTAAGCCGTTTTCGATGATGTGGGTCGTGTTTTCCACCAGACCAGGCACGTAGCCACCGGGGAAAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63826-61474 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDW01000039.1 Levilactobacillus zymae DSM 19395 NODE_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63825 29 100.0 32 ............................. ATTTCGCTGGTTTGGCCCCGTGTTGGTTCTCG 63764 29 96.6 32 ............................C GTGCTGAATTGGTGGCTAGATCCACGTATTTT 63703 29 100.0 32 ............................. GCTCTTGGCGTTTCTGTAGATTACTTGTTGGG 63642 29 96.6 32 ............................C CGTTTCAATGGCCTTGATTAAGGCCTCTCCCT 63581 29 100.0 32 ............................. AAACAACTCATGCAACACGTCCTGGTCAGCCC 63520 29 100.0 32 ............................. AGGTCAGTTGGCTGTGCGTTAGTGACGCTGAA 63459 29 100.0 32 ............................. AAGATGCTCATCTTTAAGCCTTTGAAGATAAT 63398 29 100.0 32 ............................. CAAACCCCTAAGTGGGCGAACGACAAGGATTC 63337 29 100.0 32 ............................. AACTGTACAAAAAAAGAGCCACCCACCTCGGT 63276 29 96.6 32 ............................C GCTGGTAGTAGTCTTGGTAAAGTCGCTTGGTA 63215 29 96.6 32 ............................C ATGAGTCGTATACATCGGTTTGCCAGTATCTG 63154 29 100.0 32 ............................. TTATTGGCTTTGACGTCCGCCATGTCCTTCAT 63093 29 100.0 32 ............................. GAAGGCGTCAAAAAGCAGCTAGTAGAATTGAA 63032 29 96.6 32 ............................C GAATTAGCAATCGTTTCACCTTCTATCAAAGT 62971 29 100.0 32 ............................. TTATCGGGACATGAATAAGTCGCATTGGCGGC 62910 29 100.0 32 ............................. GATGTGGTTTCGCGCAATCGGCTGTATGGCAT 62849 29 100.0 32 ............................. AATGATGACGAAATCCTCGATATGCGAAATGT 62788 29 96.6 32 ............................C TTTCTGTCATGATTTTTGTAAATCGACTTGGA 62727 29 96.6 32 ............................C GGCTTATACCCACTAGATTGAATTTTCTCACC 62666 29 100.0 32 ............................. TCGAAATGTTGATGGCATCGCGCCCCGAAATC 62605 29 96.6 32 ............................C AGAAGCAATTATGGGTGAATTTGGTGCGAAAG 62544 29 100.0 32 ............................. CACCCCGCCGAACGCCAAGGTAACTATTGAAC 62483 29 100.0 32 ............................. AATACATCACTTTAGGTGATATTTCAATCACT 62422 29 96.6 32 ............................C AGAATGCTGTGAAGCGCGTGTGCCAGTCCAAC 62361 29 100.0 32 ............................. AATTAACCTCTCTTTATTAGGATTGATAGAAG 62300 29 96.6 32 ............................C CGTTGATATGACGGGCAGGGCCTTTTTGCATT 62239 29 100.0 32 ............................. AAATTCCGGCGTAAGAGTTCCGGCGGCCAAGG 62178 29 100.0 32 ............................. AGGAGGAAACATTATGAATTTTGGTAAAGCGC 62117 29 96.6 32 ............................C CGGGGACTACACGGCAGTCAGCCACGGGGTGT 62056 29 96.6 32 ............................C TCCAAGACCAGTACACCACGGTAAAGGGTTTG 61995 29 100.0 33 ............................. CGCCACGGTGAGCAATTGCGGAGTACCTTCTCG 61933 29 100.0 32 ............................. ACCGAATCACGCAGCTCGCCGCAGCGGTCACG 61872 29 100.0 32 ............................. CTTTGCCACTGATCAGAATGGCAAGGAAATCT 61811 29 96.6 32 ............................C GACTTTTGAATAATTACTTCTCTCATGATAGC 61750 29 96.6 32 ............................C GGATTCGCTGATTATAGACCCGCTTCATTGTC 61689 29 96.6 32 ............................C CAAATGCAAAGCTTCCCATTAACCACGCTAAA 61628 29 100.0 32 ............................. GGCAACTTCCGGTTCTCCCGGAACTTCACCAA 61567 29 96.6 33 ............................C TCCGACCACCGGCTAGCCGGCAACGTATACTTT 61505 29 89.7 0 .......................A...GA | TCC [61479] ========== ====== ====== ====== ============================= ================================= ================== 39 29 98.3 32 GTATTCCCCACATGTGTGGGGGTGATTCT # Left flank : GAAGATCTACCCGGTTTACAACAACGTCTTTAACGATTCGGCCTTAGCCAAGCAAAAGGGCACCACGGCCGACATCAGTGACCGGCGGGTAACCATCACCCACCGGGCCTACCGGATCGATTCCAACGGTCACCAGACGGTTTATTACCAGATGGAAAACGGACTGTGGACGCGGGCCAGTGCGTTTGATTTGAATAGCTAATATAAAGCGATTGAGCCGCTATAAACTGCGACTCTAAATCATGATTAGGTGTCGTTGGTGTTGAGCCAGCGACACCTTTTTGTCGTGGTGATTAGGATTAAAAAATAGGCTAAGTGGCTGGGCGCTTGATGGTCAAAATTAATGCGACTTAAACCGAGATTATGCTGTAGATGGATTTATTGAAATCGTTAACAACTATTGATAAAATAAGTACCGGAATCATATATATTAAAAGCAAGTTAATGAAAATACGTAACTAGTTCGTTTTCAAATGGCTTGATGCCGGGATTTGTTTAGT # Right flank : AAAAATGGCTTCTTGTCAATCGGTGTTGATGAGGACTATTATGAGGATCCAATTCATTTACGAATTGGATTTTTTTGACTTTGATTTTAACGGCGTTCTCCTCAAGATTTGATTCTTTGGTCCCAACTTGATATTGATCAATTTTAAACCGGGGTTTTACCGGTATACTAGGTTTTGTCACCACGGCGGAAACGAAGGGGTGAGGCAAGTCATTGGCGGACTGGCTTTCAATTGAGCGCATCTTCAAGAAAACTTCACGTTTCCGGCAAAAAGTCCTCTGATTCGCCTGCTAAAGTGGGGGTATAGCCTTGAGAAACCCGATTTTTTCAATTAAAAATTGAGAAAAGGTTAAAAGGTCAGTAAGTTAAGACTAATGGGTTTCATCATTGCCGATTGTGGTGTACAATTATTAACATAAATTAGCACTCAAACAGAAGAGTGCTAAAATCTCAGGTACCTCATCGACAAGCACATCATTGGAGGGCGATTCTATGATTAAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //