Array 1 45845-44157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYZ01000046.1 Propionibacterium freudenreichii strain CIRM-BIA 135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ==================================================== ================== 45844 27 100.0 44 ........................... GCCTTTTTGGGACAGTTTGGTGTTAGATTATGAAGATTGCCCCT 45773 27 100.0 47 ........................... GCCGAGCGCGTGGCAGCATATCAGCTGATCTCGGATGCCNNNNNNNN 45699 27 92.6 44 NN......................... GCTCGGTGACGCCGCCCTGGCGATGCTGCCGACCGATTGCCCCT 45628 27 100.0 45 ........................... TGTCTTGAATCTCGAGCTCGGAGCCGATATCAAGCNNNNNNNNNN 45556 27 100.0 43 ........................... GGGGCTGACGTTCTCCGTTGACGGCCAGCACAAAATTGCCCCT 45486 27 100.0 44 ........................... GTGTTTGAACCGGTCAGACGGGTCATCACCTTGACATTGCCCCT 45415 27 100.0 43 ........................... CGACGCCAGTCATCGAGTCCCCGGTCACACGCACATTGCCCCT 45345 27 100.0 42 ........................... CAGGCCCTTGTGGCAGGTGGGGATTTCGCCGGNNNNNNNNNN 45276 27 100.0 45 ........................... CTGAAGGGGAGTACAGACATTGGTAAGCTCCTTATGATTGCCCCT 45204 27 100.0 44 ........................... AAGAATGGCGCGACCGTACGCCGCAACGGGCTGGGATTGCCCCT 45133 27 100.0 48 ........................... GAGAGTGATTAGGACCCCAGCTGTGTAGCGGGGCCGCTCATTGCCCCT 45058 27 100.0 46 ........................... ATTTATGTTTTTTCTCTGGTGATTTCTGCCGCCGCGAATTGCCCCT 44985 27 100.0 43 ........................... CGTTTCAAGTCTGAGACTTGACCCACGGTGTGGGTNNNNNNNN 44915 27 92.6 43 NN......................... GCAGGAACAGACTCGCGCTTGGTATCCAATCGANNNNNNNNNN 44845 27 100.0 44 ........................... TTGGGGTGAGGTGGGTGGCCAGATCCTTGCCGGGAATTGCCCCT 44774 27 96.3 44 .............A............. GCGGCCGCGATTGCGTTGAGCTCGCTGACGAACGTATTGCCCCT 44703 27 100.0 48 ........................... GCTTCCGTTGGTGAACACCATTTTGGTTTGATTCCACTCATTGCCCCT 44628 27 96.3 52 .............A............. TCGTCGTGGGCGCCGGGCACGTCCATCTATCTGGNNNNNNNNNNNNNNNNNN 44549 27 96.3 46 N.......................... TCGGCATGATGCCAGCGCCGATTATCGTGAGCGTATTATTGCCCCT 44476 27 100.0 46 ........................... AAGATGAGCGGGCCGAGGGGTTCGACCCGGGACGCGGATTGCCCCT 44403 27 100.0 47 ........................... GTGAGCTCGGGCTGAGCGTGAGCCAGACAGCGGCAAAGATTGCTCCT 44329 27 100.0 45 ........................... GCATTTGCTTGCCCATTTGCTTCCTCCAATCTGCGTATTGCCCCT 44257 27 100.0 47 ........................... CGCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGTATTGCCTCT 44183 27 96.3 0 ..........A................ | ========== ====== ====== ====== =========================== ==================================================== ================== 24 27 98.8 45 CCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : AGGGGCCCTTCATTGAGGCTGGTCGGCGCCGAGCCATTCCCGAAGGCCGTCCNNNNNNNNNNTTCTGGAGGGGCCCTTCATTGAGGCCGCGGCCTGCAGCACTGTAACTCCGTGTGGGCTTNNNNNNNNNNNNNNNNNCTTCTGGAGGGGCCCTTCATTGAGGCGACTGAATGGCGTCGAAATCCTCGAACATCTCGTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTCCAAGAGCTTCAGATACTTCTCGTTCGTGACGTTTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCGACATTCGTGCTATGGTGTCATTCGTCGGGCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGGAGGGGCCCTTCATTGAGGCCACACCGTTAATCGTCAGAATACGTACAAGATGACGATTGCCCCT # Right flank : TTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTTCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAGCCGCCATGACAAGGCGTTTTCGTCACGCACTGGCGATGCCGAGACGTGCCCCCACACAGCTCCCCCCGCTACGGTTAAATCCGGCGGGGCCGGCAAGGCATGCCCCCTTCATTGAGGCTGACGCCAATAGATGGGCATTTGCGACACCCGCCAAAGTCCCTCCTCACGGAGGGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 46039-46351 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYZ01000046.1 Propionibacterium freudenreichii strain CIRM-BIA 135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================================== ================== 46039 26 100.0 46 .......................... GAGGGGCAATAAACGTCACGAACGAGAAGTATCTGAAGCTCTTGGA 46111 26 100.0 44 .......................... GAGGGGCAATACGAGATGTTCGAGGATTTCGACGCCATTCAGTC 46181 26 100.0 51 .......................... NNNNNNNNNNNNNNNNNAAGCCCACACGGAGTTACAGTGCTGCAGGCCGCG 46258 26 96.2 42 .........................N NNNNNNNNNGGACGGCCTTCGGGAATGGCTCGGCGCCGACCA 46326 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================================== ================== 5 26 99.2 46 GCCTCAATGAAGGGCCCCTCCAGAAG # Left flank : AAGGGCCCCTCCAGAAGGNNNNNNNNNNGCTTGATATCGGCTCCGAGCTCGAGATTCAAGACAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCGGTCGGCAGCATCGCCAGGGCGGCGTCACCGAGCGCCTCAATGAAGGGCCCCTCCAGAANNNNNNNNNNGGCATCCGAGATCAGCTGATATGCTGCCACGCGCTCGGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCTTCATAATCTAACACCAAACTGTCCCAAAAAGGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCGTCATCTTGTACGTATTCTGACGATTAACGGTGTGGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCCCGACGAATGACACCATAGCACGAATGTCG # Right flank : GGAGGGGCAATGGCGGGCGTGGGAACAGGGCTCCCACTAGGCATTATACCGGCCGCCTGCGAGCGGTGCTGAAGAAGGATGGCTCGCGCGTGGAGGATTGATGACCCCTTCAGCGCAATCTGCTTGTGACAAGGGGAAACATCACGCGAGCGGCTCCGCGTGACAACCGGGCCGCAGAGCCGCTGGTCGTCAGATGATGATGCTGCGTCCGCCGCTCTGGTACCTCTGACCGCCCAACCAGGTGATGCGTTGGGCGTCTGCCGACGTGGACATGCCCAGGTCGCAGATCACCACCGAGTCCTCATCAATATCCATCGCGTCGGTGAGATCGTGGCGTAGCACCAGCAGGTGTGACGGCGGACAATCAACCATGAATACGCTGTACTGCACACGCTCCCCGTAGCCCTTCAGTACCGTGGCCAACCTGGTGCGACGACGGTCATCGGGCACGTCGTAGGCGATCAGAAAGCAATGGGAATCTCGTCGGCTCATCTGACCGT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //