Array 1 57283-56519 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRM010000027.1 Streptococcus thermophilus strain Strac48 Contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57282 36 91.7 30 A.....AC............................ TTTTAGGTATGTTCTAATAGCTTTTTCTAC CT [57273] 57214 36 100.0 30 .................................... ACTCTTAGCAAAACTTACACAAGAATAGTT 57148 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 57082 36 100.0 30 .................................... GCATACAATAGTTACCTTGGGACTACGGTT 57016 36 100.0 30 .................................... GGGTGTTATGTGGTCGCCTATACGTGCATC 56950 36 100.0 30 .................................... AAGACAATATCAAACATTTTCATTATCTGA 56884 36 100.0 30 .................................... ACGTAGAACTATCTATAACTACATCAAGAA 56818 36 100.0 30 .................................... GTTTGCATCACGTACTTTGTTAACGTTCTA 56752 36 100.0 30 .................................... ACGTAGAACTATCTATAACTACATCAAGAA 56686 36 100.0 30 .................................... CTTGTCGCCACAATAAATGTGGAAATATTT 56620 36 100.0 30 .................................... ATTATAAATATCCCATTCATCTTTTGTGAT 56554 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.3 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CTTGTGGATGAACTCCACTCACGTGGCTTCAAGGTAGGTTTAGTTTCTGGTGGTTTCCATGAGACAGTTGATAGACTGGCAAAAGAGGCAGGTGTTGATTATGTGAAGGCCAATCACCTTGAGGTGATCGATGGTTTCTTAACTGGAAAGGTTTATGGTGAGATTGTTACCAAAGATGTCAAGGTAGCTAAGCTTAAAGATTGGGCAGCGGAAAATGGACTTAAACTCTCTCAAACCATTGCTATGGGTGATGGAGCCAATGATTTGCCTATGATTAAGACAGCCGGCATAGGCATCGCCTTTTGTGCCAAACCAATTGTCCGTGCACAAGCTCCTTATCAGATCACAGAACCAGATTTGTATAAGGTCATTGAGATCTTGGATGAGGTGGGAAAATAGTAGAGATAAAAGAGTCCTTTGGATGATTCCAAGGGACTCTTTGTGTATAAAAAAACACCGAATCGGTGCCACCTTTTCAAGTTGAATACGGACTAAGCCTT # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 68061-69084 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRM010000013.1 Streptococcus thermophilus strain Strac48 Contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 68061 36 100.0 30 .................................... AGCGGGCGCATGCTATACTAAACCCAGTAA 68127 36 100.0 30 .................................... GTTCCAAAGTTTGGGAACTGGTTCGGCAAA 68193 36 100.0 30 .................................... CAAAAATTTGGGATACGTGGCAAGTCAAAA 68259 36 100.0 30 .................................... TAGAGTCAAACAGAGTTTTGGCACTAAATA 68325 36 100.0 30 .................................... AGATAAGAAGCCATTCATCTGTTCGGCATT 68391 36 100.0 30 .................................... CACAATGGGTGGGAGCTGTACAATCTTATG 68457 36 100.0 28 .................................... GTCATTTATAGCCTTTTCTACACGCGCT 68521 36 100.0 30 .................................... TAGATAATGAGTAGCTAACTTTATCGTGGC 68587 36 100.0 30 .................................... AAACTGACGTCTCGAACGTAGTAGCCACAT 68653 36 100.0 30 .................................... ACACACAAGAGCATGGAAGCAGCTTACAAA 68719 36 100.0 30 .................................... AGCTACATATTACGTTAAATTAAGACAGGC 68785 36 100.0 30 .................................... GCTTTCTACCAATTTCCGCAATGGCTCTTA 68851 36 100.0 30 .................................... TTGGTACCAAATACGAGAATAGCGCCATCA 68917 36 100.0 30 .................................... GAACCCACTCACAGAATTTGAGGGCAATCT 68983 36 100.0 30 .................................... TTGCCATAATTACCTCCTAAGCCTCAACTA 69049 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGAAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAGGCTCTTTGTCAACTGTAGTGGGTAGATGAAAAGCTAAATTCTTGAGAGGACCAGTTTGGTCTTCTCTTTTTTAATATTTACTGCCATCAAAATCCGTTTCTTAAAGTTTTCAAAGTTCCTGAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //