Array 1 83275-90073 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXY01000022.1 Bifidobacterium pseudocatenulatum strain CA-05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 83275 33 100.0 34 ................................. TATAATCCTCAGACGCTCGGCAACACCATGTATT 83342 33 100.0 35 ................................. ATGGTGGACCACACGATACGTCACCAGGACCGAAG 83410 33 100.0 36 ................................. AGGTCGGCCAACTGCATGGTCTGTTGGTTGGACAGG 83479 33 100.0 34 ................................. AGCTATGCGAAATGGACGCCAAACACGAAATTCA 83546 33 100.0 34 ................................. ACGTTTACGACGTTGCCAAGTCGCATCATGTTTG 83613 33 100.0 34 ................................. CGTACCGTTGATTATCGCCACGTCCGAAACCAAC 83680 33 100.0 34 ................................. CGGTATTTCCTGTGATACCGCGCCGCCTTGTGGG 83747 33 100.0 35 ................................. TGCAGATGACGAACGTCCTGAGTGACGAAGCGTTC 83815 33 100.0 37 ................................. ATCCCTGAATTTGTTACGTATGGCATAGTCGGCATAG 83885 33 100.0 35 ................................. AGATTATGACCGTCCAATACGCCCATAAGCGGCTT 83953 33 100.0 34 ................................. TCCGGCAAGGCCGCAGCACGACTGAAGGGAGTCG 84020 33 100.0 33 ................................. TCCGCTTGATGCTTATGGCGCGGCTCAGGCTTG 84086 33 100.0 34 ................................. GGCAACGATCCCGCACGCCGGCAGGCGCTCGGTG 84153 33 100.0 34 ................................. GAACCCCGTTTTGACGGATACGATGGACAGTTTC 84220 33 100.0 37 ................................. CAAGGCATTGCCGCGAATGACGGCCCACTTGTCGGAG 84290 33 100.0 35 ................................. GTGTGGACGGTTTGCCTCATGTTGAGTTGATCGCT 84358 33 100.0 34 ................................. TGCCAACTCCTCCGAGGAGAAGACGGAAGCCGAA 84425 33 100.0 35 ................................. ACGGTCGGTCAGAATGTCGGCCTCATCACTTCCGA 84493 33 100.0 36 ................................. ACTCCTGCCGGCAGACCATCCCACATGCGTCCGAAA 84562 33 100.0 35 ................................. GCGAAACGTTTTCGGCCCGCGCCTTTCGCGCGGAA 84630 33 100.0 36 ................................. GGACAGCCGGAGCCCGAGGAGCCGAGCTTCTGATGC 84699 33 100.0 36 ................................. ATGTCGGCCATCATTGATCCTTTCTGTGGTGGTTGT 84768 33 100.0 36 ................................. AGCCAACAGGTGCTGAAGAACGAGACCCTGCGGGAC 84837 33 100.0 35 ................................. ACGTACTGGAAATTGCACGAGTTGTATGTGCGTAG 84905 33 100.0 36 ................................. GCGAACTCGTCCAGGAAACAGTGCAGGGGAGTGGCG 84974 33 100.0 35 ................................. CGATCCGGTAGACGCCGGACTGTTGTGTGACGGTG 85042 33 100.0 36 ................................. GTGGACTTGCAAGGACTGTGCTTATGCCGACACGTA 85111 33 100.0 36 ................................. AAGCACCCACTGAGCGTCAGCGCTGTTGCGGCGGCA 85180 33 100.0 35 ................................. ACATGAGTCCACCGGCTCCCAGCCGGATAGGATGC 85248 33 100.0 32 ................................. TCGATCCACCATGCCGCCGACGTTTTGTTGGC 85313 33 100.0 35 ................................. TCGTGGGGCGAACCGCACGGTCAGCCATAGGACGG 85381 33 100.0 34 ................................. TTGTACACCGTGTTTTTCGCTGCTGGCCGCATGC 85448 33 100.0 35 ................................. GGAAGTGAAGGCACGCTGAAGCGTCTTGTCATCCG 85516 33 100.0 35 ................................. TCCACGGTCGCGCCCAGCACGAACTGTCCGGGCTG 85584 33 100.0 36 ................................. GCCTCAGTCTTCCGAGACAACAGTGAGGGTTATCAG 85653 33 100.0 33 ................................. GTTGCGGACTTGACGAAACCGCCGAATCCCTGA 85719 33 100.0 34 ................................. GTGAAACTCGACGTCCGCAAATGCTACCCGTCGA 85786 33 100.0 36 ................................. ACCATCGCAAACACCGCGCGCGTCTATAACAAGCAG 85855 33 100.0 34 ................................. GTCAATGAACGAGCGGAAAAACCCCTTGCTTTGC 85922 33 100.0 37 ................................. ACGCCACCGAAACGGTGTCCGAGTACGGACCTGTGGT 85992 33 100.0 36 ................................. GCGGAATACGCGCGCAAGGGCGGTTTTTATCGAGTG 86061 33 100.0 33 ................................. GTTATAGGGGTGCGTTGGGCAAACATAATGTCT 86127 33 100.0 33 ................................. GTTTATGAAAGTGACACCGTCTCAATCCGTACT 86193 33 100.0 35 ................................. GACATAGGCGTTACCCAGCCGAATATCATGTTGAA 86261 33 100.0 35 ................................. TCGCACCTATTTTACCTGTTGTCGCCTAATGTCAG 86329 33 100.0 35 ................................. AAAAGGCGAACCCCTATTTTGCAAAATACCGACTT 86397 33 100.0 36 ................................. TGCTGGGATGAAATGCTCGAAACTACCAACTCTCCT 86466 33 100.0 34 ................................. ACGGCCCCGACCGGAGTGGCCTGGACCCCGCCGG 86533 33 100.0 35 ................................. CCGAAGATTCGTTCGTGCTGGTCGAGTCCATCTCC 86601 33 100.0 33 ................................. TTCGCCGGTGGTCGAGCCAATCAGACCCTGATC 86667 33 100.0 33 ................................. TAACACACTGTACCTTAATCACTGGGGCATCTA 86733 33 100.0 37 ................................. CACGATAGCTTCGTCGCCATCGACGGAGAAATCGAGG 86803 33 100.0 33 ................................. GCCACGCAAGACACGAAAACAAACCAACGCAAA 86869 33 100.0 33 ................................. AAATCAAGCGAACCGGCATAACCGTCGATATGG 86935 33 100.0 35 ................................. ACCAAACTGCTTGACATGAACATGGTCAGCACGGG 87003 33 100.0 35 ................................. AACGCCTGCCATGTGACTGTCGCTGATGGTGGGAC 87071 33 100.0 34 ................................. GTGTTTGGTGCTGGTCGACGGTCTGATGCAGGAG 87138 33 100.0 35 ................................. GCATGTCTCGCAGAGGATTGCGTCGCAGCCGTAGG 87206 33 100.0 32 ................................. GTAGCACACCTCAGATAGATGCGCAGCGGCCG 87271 33 100.0 35 ................................. TACATCCGCACCAATGACGGGGAAATGCGTCGCGT 87339 33 100.0 36 ................................. CGGCAACCCTCTCAATCATCGACGATGACATGGTGG 87408 33 100.0 34 ................................. TGGATTGACACGTTGGAGCGTGCAATCCGCACCG 87475 33 100.0 36 ................................. TATCTCGAAATGGGCGGATTGCGCGCCATGGGCGAG 87544 33 100.0 36 ................................. TTCGGCGAGCGTGACGCATGGCAGAAGATCGCCGCA 87613 33 100.0 34 ................................. GACTCGGATCTGGATGATGTGGCGCGAACCATCG 87680 33 100.0 36 ................................. CGTAAGGCGATTCCCCACCAGTCTGCCACGCGATTG 87749 33 100.0 34 ................................. AAAAAGGCTGCGCCAGTAGCAGTGTCGGTTACGC 87816 33 100.0 33 ................................. CACGTCACTTGCTTACAATCTCGGCCACTAGAG 87882 33 100.0 34 ................................. ATGCCAGCGCCATTCCAAAACGCCACGTCACCAT 87949 33 100.0 35 ................................. GAACTGCTCGCTGAAACCGGCCACCAACTGCTTGG 88017 33 100.0 34 ................................. AACCTAGCGAACGGCCTGATCGGTGTTATGGTAA 88084 33 100.0 34 ................................. CAGAGGTGGGCGAGGTAAACGCTTTTGGGTCCAG 88151 33 100.0 34 ................................. GTGCTGGCCTTGGCCGTCACGTCGAGGCTTTCGT 88218 33 100.0 36 ................................. CTCGGACGTGACGCGGAAAGCCCCGGACACGGGTCG 88287 33 100.0 36 ................................. TGCCCGTCGCCCTGCCAGCATGCCTTCGAATCGTCG 88356 33 100.0 37 ................................. GGCTTGGAAGTCGAGATGGAATCCGAGCTTGACACCG 88426 33 100.0 35 ................................. ATGTCGGCAAGCTGCATGGTCTGCTGGTTGCTGAG 88494 33 100.0 34 ................................. CGTATCGCATCATTCCGATTCCCGAAGACATGTT 88561 33 100.0 34 ................................. TCGACCTGGACAGTGCCGTAACTGTTGCCCTTAT 88628 33 100.0 33 ................................. CAATCGGATTACCCACTATGCAACCATTTGCAG 88694 33 100.0 35 ................................. AAGTTCGTGACCTACGACAGCACGGATTACACCGA 88762 33 100.0 34 ................................. ACGGTAACGGCCAAAAAGTTTTGCATCTCACATA 88829 33 100.0 36 ................................. AACCTAAATTAGGATCTACTAAGAAGGGTATCGAGA 88898 33 100.0 36 ................................. TTAAACCGATGCGTGATAACAAAGGATCAGATGGAT 88967 33 100.0 35 ................................. TGATTGTCCCGCCATGCCTGACATGCGCGGCGCGT 89035 32 97.0 33 .....................-........... GTCGGTGCGGATGGTGTTTGGCTTGAGGATCGG 89100 33 100.0 34 ................................. ACGATCAAGATCACCGACGACGGCCACGTGACCA 89167 33 100.0 35 ................................. AGTTCCATGTCCTGCGTCCGGTCGAGTAGGTCCTG 89235 33 100.0 36 ................................. TGCGCTGCAGTCAGACTGCGGAACTGCTTGAGTCGT 89304 33 100.0 33 ................................. TTGATCAGGCGCACGTTGCCGGCGGTATTGCCG 89370 33 100.0 36 ................................. TGATTGTCCAGCCATGCCTGGCATGCCCGATGCGTG 89439 33 100.0 34 ................................. TGCAAATGACGAACGTGCTGAGTGACGAAGCCTT 89506 33 100.0 33 ................................. CTTGCGGTGCTGTTCCACGTCAGTCCGGCGAAG 89572 33 100.0 34 ................................. AGGAAATGATTGAGTGCAGTGCCGAGCGCATTGG 89639 33 100.0 33 ................................. CGTACTCCAGCTGGGTTTTGCAATGCTACTGCC 89705 33 100.0 35 ................................. ATCGAGCACGCCGAGCGCGTTGCTGCCGACGTTAC 89773 33 100.0 36 ................................. CACGGGGTATCGGCCTTATACTGTATGACGCGTTTT 89842 33 100.0 34 ................................. CGCGCGTTGGGCCAAACCCGACGAGATGGCACCG 89909 33 100.0 34 ................................. TGGCTGTACGACACGATCGACGTGACCGCGCAGA 89976 33 100.0 32 ................................. TTGAGCATGCGGAGCATGACGTTGGCGGTCGT 90041 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 101 33 100.0 35 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : TCGGTGTCTGCATCGTTCTGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCCCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCAAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //