Array 1 222766-224258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIHU010000002.1 Escherichia coli strain SX3G NODE_2_length_304997_cov_127.281175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 222766 29 100.0 32 ............................. CCCGCTAAATATGCCGCGTTCGCTGAACGGCT 222827 29 100.0 32 ............................. GTGATTCTCGCGACAAATTGCGTAACCGGGTA 222888 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 222949 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 223010 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 223071 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 223132 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 223193 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 223254 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 223315 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 223376 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 223437 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 223498 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 223559 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 223620 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 223681 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 223742 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 223803 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 223864 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 223925 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 223986 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 224047 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 224108 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 224169 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 224230 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 239760-240887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIHU010000002.1 Escherichia coli strain SX3G NODE_2_length_304997_cov_127.281175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 239760 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 239821 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 239882 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 239944 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 240005 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 240066 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 240127 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 240188 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 240249 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 240310 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 240371 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 240432 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 240493 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 240554 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 240615 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 240676 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 240737 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 240798 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 240859 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //