Array 1 199006-199187 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007756.1 Porphyromonas gingivalis strain HG66 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 199006 37 100.0 35 ..................................... AGAAGTTTTAAGATCTCTTTCAGAAAAAAATCTGA 199078 37 100.0 36 ..................................... TTCTTTAAAACAATATTAATAACAGTATTGTTTATT 199151 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : TCCCCTCCCCCGAAAACGACCGAACTTTCCTTTTCGGACAAATCCGCCTCTCCGAAGTTCACAGACCGGAAATGCTCGGATTGCGGAGCGTGTTTTCGGGAAAAGCGGCGCGAGAATTTTTTCGCTGTGGCGCGAGAATTTTTCACTTCCCGAACCAAAACGAAAAAGTTCCCGCGCCACGTTTTTCAGAGCATGGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGCTACACAACTCGCTTGCTTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACGAAGGATGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGTTTAAGCCTCCGAATGGGGAGATTTTTCGTCTATTTCATGCCATAGAGCACAAGAAGCCCGGGCATGCGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGCGTTCGTTCTAACCCTCGGTAATCAGT # Right flank : GTACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGGCAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAGAAATGCAGCTACAACACTATTTTTGCAGTTGAGCTGATTATATCTCATTGATATACAATGAGATTACCTGATTTTCTGTTTTCGAAAATAAGAAAGAGGGAGCCTTCGTTTTTTAGATTTTCGAAAAATAGAGAAAGACACCGTTTGATAATCAAACACTTACAAATAGCGAAAAGCCTCTATTTTTCGAAAATAAAAGTCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAGTTGTTCTTGCAACCGACTGATAATCAATACGTCAAAGAGCGATGTGAGGTTCGATTTTTTTCGAAAAAACTAAACCACAATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCAGCGGTGTAACAATGCTGACAGAGAGGAAGAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 235591-241887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007756.1 Porphyromonas gingivalis strain HG66 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 235591 30 100.0 36 .............................. TCCGCGCCGCGAGGTGGAGACCCTGCCGGAGGCGAA 235657 30 100.0 37 .............................. CCTGAGAAAGAGGGGAGGGAGGAGCGATAGACGAAGT 235724 30 100.0 36 .............................. CGAGAATCTATTGAGTAGCGAAGTCGTCACAAAGAT 235790 30 100.0 36 .............................. AGCCATAGCTCTTCAATTTCAATTTCTTCTTTTAAT 235856 30 100.0 36 .............................. CGAAAATAACAAAAATAGATATATTTATAAAAAAGA 235922 30 100.0 34 .............................. ACTCTTATCATCTACTATCTCAAAAGCTCTTTTT 235986 30 100.0 38 .............................. TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA 236054 30 100.0 36 .............................. GAAACATTCGAGCCGTATTCAATTACGCCATCAATG 236120 30 100.0 38 .............................. CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA 236188 30 100.0 36 .............................. ATTTCTTCATCTCGCGCTTGCTCAAAAGCGCGTTCA 236254 30 100.0 34 .............................. TGCATCAAGTCACGAACTTTCTGCGAGATGGAAA 236318 30 100.0 36 .............................. CCGTCTCGAAAAAATATCGGGACGTTTTTGTTTTCT 236384 30 100.0 35 .............................. TCGATCGTGATATAGTCGCCGCCTCGCCCGCCGCG 236449 30 100.0 36 .............................. GATGCATAAGTTCTGAGAGGGTAGCGGCCAAGATAC 236515 30 100.0 37 .............................. TTTGAGGGCTATTTGCCCGCAGCTGTGTCCGTCAAAT 236582 30 100.0 36 .............................. ATAGTGATAATATCCTACGTGCTTACCTCGGACTTC 236648 30 100.0 36 .............................. AAGCAAGAAACGATGAGCTTCTAATGAAACAAAAGA 236714 30 100.0 37 .............................. CTGGATTATCGAAGTCCTGTCTGAGGACGAACTGCAG 236781 30 100.0 35 .............................. CTCCTTCACTTTGTCGACAATGTGCACTGTATTTG 236846 30 100.0 36 .............................. AGGCGGAGTATCTCTTTGCCACCCAGTCCGCGCGCA 236912 30 100.0 36 .............................. CGTAACCGCCTCGGTAGACCGCTCCGCACGGTCGTT 236978 30 100.0 37 .............................. GTGCATTCCGGACAGCTTTCGCTTAAAAAGTTAGCGG 237045 30 100.0 37 .............................. AAGAACGAACGCCTGCGCGATAAGCACCGCGAGCGTA 237112 30 100.0 36 .............................. ATTTACCTGCAGACTTGTGCCCACCCACTTGATAGA 237178 30 100.0 36 .............................. TGGTCACGGAGCGATACCATGAGTGTTTAGTAGATG 237244 30 100.0 36 .............................. CGGAGGAGATCAGCTATGCGGATGATACCACCCGTG 237310 30 100.0 36 .............................. TCAGAAAACTCGCGTCCATCTGATAGATGTACACGA 237376 30 100.0 36 .............................. TAAACGATCGAGGCGCGGAGACCCTCCTTGCCAGTA 237442 30 100.0 37 .............................. CCGTTCAGGAAAAAGTAACCGAGCTGAAGACCATGCT 237509 30 100.0 35 .............................. AGGTGCTATCGCAGGACTGCAGGACATCCTCAATC 237574 30 100.0 36 .............................. AGCCGCTCGACTTGACGCCATGCAAAAACAGATAGA 237640 30 100.0 36 .............................. TCTGCGAGTTGTGAGAGGCAATAAACTGCTGGGAGC 237706 30 100.0 36 .............................. TTGATTCTATTCCATTGAAACCGACCTTTTTCGTTA 237772 30 100.0 37 .............................. GGGAAGCTGCTTTGCTCGCTGAGATAGCAGCACTTCA 237839 30 100.0 36 .............................. TTTATTGACGCCACCCCGCCGACGAAAAAAAATCAT 237905 30 100.0 36 .............................. TTTCGGTCTTTACGTTTGTCGCCACGGATACATGCT 237971 30 100.0 37 .............................. ATTGTAAATAAATTACATGGCTATTGAAAAACAAATT 238038 30 100.0 36 .............................. AGAAGAGGGTAAACTATTTGCTAATCTTGAATGCTT 238104 30 100.0 36 .............................. TCTCAATATCTTTCATAGCTACTAAAAATTTACGAA 238170 30 100.0 35 .............................. ATTGCTGTTAATTCTGTCATCTCTTATTTCTTTTA 238235 30 100.0 35 .............................. GTACTGATAATTACGCTGCAAGGTCAGACGGTGAT 238300 30 100.0 36 .............................. TTGCCAGGGCTTGCTGATGCGCGCGTTCCAGCTGCT 238366 30 100.0 36 .............................. ACAGAACCAGCTCCGTCAAATCTCCCGCTTTTTGTC 238432 30 100.0 36 .............................. TGCCCCCTCACCCATCTAATCTCGAGCCGCTGAGCC 238498 30 100.0 36 .............................. TATTCATTCGCTCAAGCGAGGGCATCCTGCTGCAGC 238564 30 100.0 36 .............................. GCTCGCGGAGGGAGAGGGTGCCGGTATCCTGCCTCC 238630 30 100.0 36 .............................. CTCGACCTGTACGAGACGGGATACGCCCCATCCTCG 238696 30 100.0 36 .............................. AGAGTCTGTATGTGAAAGTGTAGTTCGAAACATTAT 238762 30 100.0 34 .............................. AGAATACTTTGAAGTTGTATTCAATTACTTTGAA 238826 30 100.0 36 .............................. CCGTTGTGACAGAGCTGCGCCGTCGTGGCTATGATG 238892 30 100.0 36 .............................. TGAAAGCCCGAAGATAATCTACACGCAAGATTGTTA 238958 30 100.0 35 .............................. CGTCATCAGGTGGATATTCTTACTGCTATCCACGA 239023 30 100.0 36 .............................. TCGTCTGCGACGTATCGCAGCTCTGCCAGCTCCGCG 239089 30 100.0 36 .............................. GAAGCCAAGGATATTGTGGCTTGTGAAATAGAACCG 239155 30 100.0 37 .............................. TATAATCCGTTTACTCAAATTGATTTTATGGAAAATT 239222 30 100.0 36 .............................. TTTTAACGCTAATCTTAGCGATGACGATGGTGTATA 239288 30 100.0 36 .............................. TAGTCTTAGACTATATGCTATCTCCACCTCGGGACA 239354 30 100.0 36 .............................. AACTATGATATCATCAAATCCAACAAAAACACAATC 239420 30 100.0 36 .............................. TATCATTCATCGGGGCGAAACACCCCCAGTTTGTTA 239486 30 100.0 36 .............................. TACCACGACGGCAAGCCCTGTCCGGCCGCGTACAGG 239552 30 100.0 35 .............................. CGAGTAGACACGCCCCCACCGGCGACTCTGCCAGT 239617 30 100.0 34 .............................. ACAGCAGTGTCTATGCAGTTCGTCTTTAACTTTT 239681 30 100.0 36 .............................. TATCTGTATAAAGCTCTCCGAACAAGCCTTCCTTTC 239747 30 100.0 37 .............................. CAACATGCCTTTATTTATAATTTTAACACTTTCAATA 239814 30 100.0 36 .............................. TGGGCATCCGTGTGGACGGTGCCGTCCGCCAAATGT 239880 30 100.0 36 .............................. AAAACAAACTCGAAGAAATGCTACAGCAGTACTGCG 239946 30 100.0 36 .............................. ACAACAAATCCTAAAGGATTTGATGAGACAAAATCT 240012 30 100.0 36 .............................. TGTAGAAACTCATGTATTCAGAGAAATGTTTAATCA 240078 30 100.0 36 .............................. GCGGATAGCGGAAGGTCACGCTGCCGGCGAGGCGAT 240144 30 100.0 36 .............................. CACAGCAACATGCATTCCATCAAGCTCAAGCGTATA 240210 30 100.0 36 .............................. GCATCTTCGCAGGAAAGAAGAAGGCTCCGTCCTCGA 240276 30 100.0 36 .............................. AACAGTCAAGGGGGAGCCGACCTCTCCGGCGGATTT 240342 30 100.0 36 .............................. GCAGTGCGGCCGACAAGGCTAACCTCGCTCAGCTGA 240408 30 100.0 36 .............................. AATCCATGTTCATGAGGAGAGGATACGAGTTCTATT 240474 30 100.0 35 .............................. CCTTTTGCTATTGCAGCAAACATATACAATAATAA 240539 30 100.0 36 .............................. ACTTCATGGATTTAGCGAGATACTCATTATAATTAA 240605 30 100.0 36 .............................. GCTCAAGCGTCCAAGAAAGTTCAAGAAATTGTACTA 240671 30 100.0 37 .............................. TACTATGGTGTCTGCATTTGAGATACGCAAATAGCAA 240738 30 100.0 36 .............................. CCTCAATATCTTTCATTGCGACGAGAAATTTGCGAA 240804 30 100.0 36 .............................. AATCTATGATGATATAGAAGAAGACGACTTGTTGTT 240870 30 100.0 36 .............................. ATTAATGATTTTCTGAAATAAAGAAGCAGTTGCATA 240936 30 100.0 35 .............................. CTCAATATCTTTCATTGCGACGAGGAACTTGCGAA 241001 30 100.0 36 .............................. CCCCGTGGTAACTCATACCACCGACTATTCCACCGT 241067 30 100.0 37 .............................. TATTAATCCTGATAAAGCTGGAGCTAAAACTACTATT 241134 30 100.0 36 .............................. TCTGGCTTTTTCATAAAATTTATCCATATCTACATT 241200 30 100.0 34 .............................. TGATATAATTAAAAACCCCATTACTGTCTAAATT 241264 30 100.0 36 .............................. ATTTTTTTAGCAAGGTCTGTATCGCTTTCGAAAGAG 241330 30 100.0 37 .............................. TCAAGACTGTTAGGTCTTTCTTAGCTGAAGAAGGCTA 241397 30 100.0 35 .............................. TATACATCTTAATTGGTGCTTCTGAATCCTGATTT 241462 30 100.0 35 .............................. GAAGAGTTCTATACCCAAGAGGCCAGTATTGACCC 241527 30 100.0 36 .............................. ACATACCATATCCAATAGCGCCTTCCTCATAGATGC 241593 30 100.0 36 .............................. CTGCCACACGGACGTGTGCGTTATTGCGCATCTGTG 241659 30 100.0 36 .............................. TGAAAAAAGAAGCAGAACGGGAGATCGTCGGATGAG 241725 30 100.0 36 .............................. CGGGAGTAGCCGCCGGTTTCCTTCTTCCCCTACCAC 241791 30 100.0 37 .............................. ACGCGCATGTTGCGCATCCAAGAGCTTAAGCGGATAA 241858 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 96 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CTGATGGTGCTGTGGTCGGGAGATACCTCTTCCATCTTCAGTCCCAAGAATCGGGAAAAGGTGATTGAATCATTGATGCGCTCCTCCAGAGCACAATCACTGAGGTTGTACCATGTCTCCAAAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGATAAGCGTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTAATGCTCAAATATACAAAATAACTCCCTATTATACAATGAATTAATAAACAAAATACACACCAATCGCCGTGCAAAGGTCTCGTATGGTGCAATTGAAATGTGCCAGCTGCAGGGGGATGACATAGCCATTGACGA # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATAACAAAAGGCTTGATGAATTTGCTCGAATCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCTGGCTGCTCTACTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAGCATTTTGCCAACACGCTTTTCCCCGATATCGTACACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 3 1329034-1329728 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007756.1 Porphyromonas gingivalis strain HG66 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1329034 36 100.0 30 .................................... TTTAGAGTGGTTTCTAATGCTTCTAGTTTT 1329100 36 100.0 30 .................................... AATTGTTCCATTATATCGTGCTTATTTGAA 1329166 36 100.0 30 .................................... TTTAGAGTGGTTTCTAATGCTTCTAGTTTT 1329232 36 100.0 30 .................................... TACCGAAGCCACTGACCCAACTACATTATT 1329298 36 100.0 30 .................................... TCTTCGTTTTTGCCGCACGGGCGTTTCTTT 1329364 36 100.0 30 .................................... ATGATTCGCTATTTTGTCCCCGTTGCGGGA 1329430 36 100.0 29 .................................... CATGCTGTATTTTTATTATCATACTGAAA 1329495 36 100.0 30 .................................... GGAGATGGCGTAGAGGCACAAAGAGCCTAC 1329561 36 100.0 30 .................................... TTCATCAAGAATTTGTTTTGTTAGAGTTCG 1329627 36 100.0 30 .................................... TTAGTAGCAATAACGAAGAAGTGTCTTAGC 1329693 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : CTATTATTCCGAAAGGAGAAAGAGGGGAAGTTGTGCTGTTGATGGGGAAGTATTTCTAAATTAGCGATCGCTAAAGTGATGGAAAATGGATAGGGGGATCGTGTTCGGAGGAGAGGGTTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCCGTAAATACCGATTCTTTTAACTCATATAATTGTTTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGACGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCGGACTCTATGATCGCTATGGCTGCGAAGCCGATGTTTCCATCGTAGAGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 2311052-2311417 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007756.1 Porphyromonas gingivalis strain HG66 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2311052 36 100.0 30 .................................... CGTTACTTCGATGAAGACTACAACGAAACA 2311118 36 100.0 30 .................................... CTACTCGTGCTACACGAGTTAGTAAATGGA 2311184 36 100.0 30 .................................... TTCGACGCTCTTGTAGAAAAATACAGCATA 2311250 36 100.0 30 .................................... AATGTTTAATCACGGATTTATAGGAATGTG 2311316 36 100.0 30 .................................... TTTGTAGATGACCAAGTCCGCACTACAGAG 2311382 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGTCCAAGCCACCAATCAAGAATCAT # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTATGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTTCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //