Array 1 4934-5289 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960116.1 Leptotrichia wadei strain KA00185 Scaffold1215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 4934 29 100.0 37 ............................. GAATAAAAAAAATAGAAGTTTATGGTAATAAAAGAAA 5000 29 100.0 36 ............................. TAGAATATTTGATCCAGCAGGACAAGATACAATTGG 5065 29 96.6 37 ..........T.................. TGTAAGTCCATTTTATTTCTACACCATTTATTAGAGT 5131 29 100.0 37 ............................. CAGAATTTAAGTGGAACTCGTGAGGTCGTAAAAAGAA 5197 29 100.0 35 ............................. TCAGCAGATGCTTGTTTGTTATATATTGAGAAATA 5261 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 37 ATTTACAATACAAAATGTTTCTATTAAAT # Left flank : CGTGTTTCCATTCCAAATGGCTTTCCACCAGCAAGTTCCTTTCTTGGATTTTTTTGTGATCCTGAAGCAAAAATATTACCTACATCATCAAAAGCATCTCTGTATTGTATCAATACTAAAATATTAACATCATATCCATTTTTAATTTTTTTTATTTCCCCTGAATAACCGCATATGCCCTAAAGCTGTAAATTCTTTATTTGATAAAGTGAAATCTACTATCTTTTTGAATCTTTTCCTTTTTTCATAATTTTGTTTAAAATTACTTTTTTTATTTAAAGAAGTTTTCCAAAAGTTTATAATATTATTTACAATACAAAATGTTTCTATTAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACAATACAAAATGTTTCTATTAAATTCCAAAAAGGTTTATGCCAAGACTTTATTCAAATTCA # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACAATACAAAATGTTTCTATTAAATCTTATCTTCCCTAAACTGCTTGAATAGTATACCATTTTTCCTCATTTTTGTCGATACCAATTTTCTCATATATTTTTATCTGAAATTTCTTTTTATTTTTTATATAATAGTCAAAAAATCCAATAAAAATCAATATTACAAGAAATCTGTAGATATCTTAGTTTTTTAGTATTATTCCAGATCGACAGATTTTATTTAGTATAATTATTGTTATAAAGAAAAAAGTAAATAAGAGAAAAAATAAAATGAATATCTAAAAATGTAAAATTTACGAATAATCAACTCAAAAACTTTTTCATCCCATCAATTAAAAGTTCACTAGTTAAACTAATAATTTCATCAAGAGAGATTTTTTTCCCATCAGTTATCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACAATACAAAATGTTTCTATTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 16055-16242 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960015.1 Leptotrichia wadei strain KA00185 Scaffold68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 16055 35 94.3 40 ..T.......A........................ CTTCTTGTTTACTAGAATGTAATGTTAATATGATATTAGT 16130 35 100.0 43 ................................... ATGGAAAGATCCAGATTGGATCAACCATTACCACCAAGACAGT 16208 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 3 35 98.1 42 TTCAATCCTTGTTTTAATGGATACTCTACTTTAAC # Left flank : AAAATTATCCCTGTCAAGTCAATATGCTTTAGGGGATTCAAGGTTATCCTCCCATTCATTTTTGCCGTATTATCCCCAAATTTATAAGCCACATATCCATGTGCCACCTCATGAAAAGTCATTGATATTACAAAAACCGCAAGTGAAATTATCATATCCCTTGAAATTTCCACCACAAAAAAAATTCTTGCAACAAAATAAACAATAACTGCAACAATAATCCCCAATTTTATTCCCGAATACTGCGGATTCAAACTCTTAAACCTGTCATAATAGTCTTTTAATTTTTTCACAAAATTTCCTTTCCAAATTTGACTTTACATAATATTTTTTATTCATTACTCAAATTCATCACCCAAAATCCAATTCCTATTGCATAAATTATATCAAATTTTCCCAAAAATAACAAAATATTTTAAAAATTTGATGGAATAAAGTATTTAAATCTTTTTTTACAAAAAAAACAACCTTATATAAAAGTTGTTGTTTTTAACGAATAA # Right flank : CCCATACTTTTGAGAAAATTCTTTATTTATCGGTGTTACAGAGATTTTTTCAGACATTAAAATCGCATTTTTTTGACTAATTTTTGTTATTTTTTGCTGTTTTTTTGGCATTTTCCGTAACTCCTAGCCTGCATTTTTACTGGCTTTCAATAGATTTTTCCTTGATTTTTTTATTTTTGGTAATGGTAGGAATTTTTACTACAAACTTATTTTACCACATTTTTTTGATTTTTCAAAATTTTTTTTAAAAAATGGAGTACCAAAACTGATACTCCAAGTAACTTCTTTTTACTACATTTTTGCACTATTTTTTAAACATTCCAGTAACTTTGCCGGCCAAGTCCTTTGCTCCTTCTACAGTTTTATCTACTGCTTTTTCAGCACCTTTTTCCACATCTTTAACAATTTTGTTATTTGCTGCTTTATTAGCCAAGTCTTTTGCACCTTCCACAGTTTTTTCAAAAACTTCTTCAGTTCCTTTTTTAATATTTTGAGCAACT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCTTGTTTTAATGGATACTCTACTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //