Array 1 107599-106122 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNH01000008.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_1583 NODE_8_length_170182_cov_1.1968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107598 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107537 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107475 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107414 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107353 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107292 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107231 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107170 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107109 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107048 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106987 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106926 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106865 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106803 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106700 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106639 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106578 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106517 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106456 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106395 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106334 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106273 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106212 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106151 29 96.6 0 A............................ | A [106124] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125285-123731 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNH01000008.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_1583 NODE_8_length_170182_cov_1.1968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125284 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125223 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125162 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125101 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125040 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124979 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124918 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124857 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124796 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124735 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124674 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124613 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124552 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124491 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124430 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124369 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124308 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124246 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124185 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124124 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124063 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124002 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123941 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123880 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123819 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123758 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //