Array 1 118252-117827 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKPC01000012.1 Streptococcus oralis strain 89a contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 118251 35 100.0 30 ................................... ACGATTTCCCAGAAAAAAGTGAACTACTCG 118186 35 100.0 30 ................................... CTCGGTCAGCGCTGGGATAACATGTCTGGT 118121 35 100.0 30 ................................... GACCGTAATGGTCTTGGATAAGTGTAATTA 118056 35 100.0 30 ................................... ACTATGCCCGTAACTAAAGCAATGGAAGGG 117991 35 100.0 30 ................................... CTCGTTCAAATATAAGGGCAGAACCTACCT 117926 35 100.0 30 ................................... ATAGAAAAGAGGAGTTCACTCCTGTCAATT 117861 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================== ================== 7 35 100.0 30 GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Left flank : TGGCTCGTCGCCTAGTCTACAAACGTTTTATCCAGCAAGTCTCATGATGCTAAGGGTCTTAAAAATCCGTATGAAAATAGGGAAAGGACACAGTGTTCGATGAACACAAGGAGTTTTATCTTTTCCACTAGGATTTTAGCCCGAGCTCAAATCAGCTCTCTGATATTCAGAGAGCTTTTTTACTTTTGTCACCTTATCTCGATATACTCAAGTATTATCTTCGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGATCATCTCCCTTCGGGGAGATTTTTTGTTTCACTAAAATTTTTATACAATCTTCGGCTCATCGCCTAGTCTATAAACGGTTTATCCGGCAAGAATCATGATGCTAAGGGCGTTAAAAATCCGTATGAAAATAGGGAAAGGAAACAGTGTTCGATGAACACAAGGAGTTTCATCTTTTTCACTAGGATTTTAGCCCGAGCTCAAATCAGCTCTCTGATATTCAGAGAGCTTTTTTATTGAG # Right flank : CTCAAATAGTATCAGCTAATTACACCATAAAGGTGCGCATCTACTCGGCTTGAAAAGTCGAGTAGCTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTTCAGTTAGAAATTACTTTGTAACTATGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTGACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 6185-7143 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKPC01000020.1 Streptococcus oralis strain 89a contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6185 36 100.0 30 .................................... TAATCTGTTAGAATGGTAGTATCAAGAATT 6251 36 100.0 30 .................................... TTGAAGGAACGATTGAAGCATTCAGTTCTC 6317 36 100.0 30 .................................... GTGTTTCACGATCTACAATTTTCAGATACG 6383 36 100.0 30 .................................... CAGCGAAAGCTTCTGTAAGCTGAGCAGATA 6449 36 100.0 30 .................................... TTATTGTCTACGCGATAGTTCACTAAATCA 6515 36 100.0 30 .................................... CCCATTTTTTCTCCTTTCCTTAAGCTATGC 6581 36 100.0 30 .................................... AAAAAGCTGAACGTGGGGAGTCGTTCTTTA 6647 36 100.0 30 .................................... CTGACTGTTCAAGGTTTGTAATGATTTTTT 6713 36 100.0 29 .................................... AAGTTTAAAAAATGTTTAAAAAGACTTGA 6778 36 100.0 30 .................................... TTAAACTCACATTCAGAACCTAGCGACCGT 6844 36 100.0 30 .................................... TGAATAACCCAGAATTCTTCCCCAAAATTT 6910 36 100.0 30 .................................... TCCCAACCACTAATATGTGCAGTATCGTAG 6976 36 100.0 30 .................................... ACAACTACCCAACTAATGAACCATTTTTCT 7042 36 100.0 30 .................................... TCATACAACGTTCATACCTGTTGCGACAGG 7108 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTTACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAGTATGAAATGAAAACAAAATTTCGTAGTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTAGAATTTAAGAATTTATAATATTTTTGAGGGGAGCAAAAATCAAAATTGACGAATTTGAG # Right flank : CAAATAAGGTGAATGCTATCAACCTTGCTTGTTTTTGTACTCTCAAGANNNNNNNNNNNNNNNNNTTTAAGTAACTGTACAACAATCCGTCAATGATATTGACAATTCCGGTTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTTTGAACAAATCAAAGCTGACTATGAATTTGTTTTTGTACTCTCAAGATTTAAGTAACTGTCGCAACAGGTATGAACGTTGTATGAGTTGTACAGTTACTTAAATCTTGAGAGTACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //