Array 1 1380-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYB01000021.1 Campylobacter fetus subsp. testudinum strain wqj11 contig00021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1379 30 100.0 36 .............................. AGAGGTCCTAATAGACACTAGCGGTACATTTTTTGT 1313 30 96.7 35 A............................. TCTGCTATGGGCAAAAATATAGAAGACAATTTGTT 1248 30 96.7 35 A............................. ATACGATATCAACCGGCAAAACCAATCTATTTGTT 1183 30 96.7 35 A............................. GAAATTTTATAATCGTCAAAAATAATAGGATCAGA 1118 30 100.0 36 .............................. GATCAGTTGGCTTTTCTGGTTTAGTAGTGTTATCAT 1052 30 100.0 36 .............................. TTTAATGGTATTTCTTGCCATTTTTGGAAAATAAAA 986 30 100.0 36 .............................. TTCTATTTCCTTTTTCAATAATCTTGTTTTGATATC 920 30 100.0 36 .............................. GGTAGAAACAAAGCTACCTTATTACGTTGGATTTTA 854 30 100.0 37 .............................. GCTTTAGGGTAAAAATAATTTTATCTTCATTTGCTAT 787 30 100.0 35 .............................. GGAGTTTTTAAAAGAGGGTGAGCGCATACCAAAAA 722 30 100.0 36 .............................. AGAAGAAAAGTTTATTAAATACAAAAGTATATCCTA 656 30 100.0 35 .............................. TCATTACCTTATGTGAAAGGTATGGCTGGGATAAA 591 30 100.0 36 .............................. GCCATTTCATTCTCGTTTATAGAAGGCTTAACGTGA 525 30 100.0 35 .............................. AAGCCTAATTTAGGCTTTTATAAATGCTCTGACAT 460 30 100.0 35 .............................. AGTTAGAGATGAAGAGGTAATAGCGACTTTTAGAA 395 30 100.0 36 .............................. TTTAAGTCTAAACAAACAACTAAATTTACAACAACG 329 30 100.0 36 .............................. AGTACCAACTGACCTAGCTGTTCTTGAGGATTTTAG 263 30 100.0 36 .............................. AGTACCAACTGACCTAGCTGTTCTTGAGGATTTTAG 197 30 100.0 36 .............................. AAAAATTAAAAAAAACAAAAGAGGATATGAATAAAA 131 30 100.0 35 .............................. ACGTACTATCTCTAAAAAATGCTATGGCTTTACTG 66 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.5 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTACACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAGTGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAGCTTTTCATAGTTTATCCTTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCATTCGACAA # Right flank : CTTTACAAGTAGCGAAAGCTTTAGCAATTTTCTAGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 10581-11595 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYB01000012.1 Campylobacter fetus subsp. testudinum strain wqj11 contig00012, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10581 29 73.3 37 A...T..-..G.GCT....G.......... TGTTTTCTAATGTATCAAAAACAGGTGTAAGTCTTAG 10647 30 100.0 36 .............................. AAGTTAATTTTTCTATATATCCAAAGCGGTATTTGA 10713 30 100.0 36 .............................. AGACTCTTTAAAATTATGTTTAACTAACTTATTTTC 10779 30 96.7 36 ..............C............... TATATCTGTAGTTTATATCAGCTATTATGTTATGTG 10845 30 96.7 35 ..............C............... GCCTTTAAACGTAGGAAACACTATCACAATGCTAT 10910 30 100.0 35 .............................. AGTATCAACAACGCTTAGAACGTCACTGAATATCA 10975 30 100.0 35 .............................. GCCCTATAAAAAAACTCAGCAATTCTTTTATATTC 11040 30 100.0 35 .............................. AGATTGCTAAACCATTTCCAAGCCCTTGCTCCTTT 11105 30 100.0 37 .............................. GGATTAGAATATATGAGGGAGACGTGCTTGTAAAGAT 11172 30 100.0 36 .............................. AGCACAAGTAAAGCTTAAGACGGAGGAGTTTTCCAG 11238 30 100.0 35 .............................. GGGCTTAGTAAAGAGGAGTGCAAAGAGTATTTTTG 11303 30 100.0 35 .............................. AAAGTACTTAAGAAGTCATTTATAGATACTAGTTA 11368 30 100.0 36 .............................. GCCACTAAAAACAAGAGCCGTTAAATTTAATTTTAG 11434 30 100.0 36 .............................. ATTTCTTTACTCGGGGGTAGAGTATAAAATAACAGA 11500 30 100.0 36 .............................. AAGTTGTCTTGCTTTGCTTGTATAGCTTTTTATCCT 11566 30 73.3 0 A.............C..TAT..A.T...T. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 96.2 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : TATATTGAAGCGTTTTTGAAATAATTAAAAGTAGCTTTATTACCATCTTTATGTTTAAAACAAGTCACTATCTCATTGCCATTAAAAACTATAAAATACCCATTATCACTGAAAGCGTTTATATATTTGTTATTTTTATTTTTAGCCATTGTATTTATAGAGTTTAAAGCCTTTACAACATCCTTTGGCTCTGTGTCGTGCTTCTCATAAATATGTGTATTGCTCTTTTTCCAAACTCTCTCAACGCCAGTTTTGTCTATGTGCTTAACTGCTTCATCTTTGCTTAATGGGCTTGTATTTTTCATCTTTACACCGTCGATCTCTTCTTCATCTATCCATACTGGTACTAGCTCAGTTCTGCAACGAAAATGATACGGCGGAAGCCCAAAGTTTGCTGGAAGTATTTTACCATAAAAAGGCTCACTTCTCCACGCAGAAGCTGCTTTTTTCTCACTTACATTTTTAGCGTTTTGAATGTTGCTACTTTGGAGCTTTATGTG # Right flank : CTTGTGCAAAAAGGTTAAATAAGTTGCTAAAATCCCTTGCAAGGTCTGTACAAATCTATAGTCTTTAAAAAGATTTCTTGACAGTTTAGACCATAAAGGGGTTATTGGCTTGTTTGGGCTATTTTGGTTAAAAACTTAGTCTTTAAAAAGACTGTATATAAGTGTAAAAAACCCCTTTTTAAATTTATAAAAAAAGGATTTTAAATGTTTGTAGGTATAGATATTTCTAAATTAACTTTAGATATCTGCATTTTAAAAAATGAAAATGATTTTATTCATTTTAAAATAAAAAATAATTTAGTGGATATATCTAAATTTATATCTAAACTTTCTACAGATTCTTTCGTTGTATTTGAAGCTACTGCAACTTATAGTTACACTGTTTCATCTCTATTAACTGAGCATTCTATCCCTTATTCTGAGTTAAATCCCAACAAATTAAGTCATTTTTTAAAATATTTTAGCGATAAGAAAACAGATAAAGAAGATAGCTATATTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [8-8] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 22688-22397 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYB01000012.1 Campylobacter fetus subsp. testudinum strain wqj11 contig00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 22687 30 100.0 36 .............................. TAACTAGTGGCAAATGGGCTAAGAGTTTTTATAAGT 22621 30 100.0 35 .............................. TCGGACTTTTTAAATATTTTAAACAAAATGACTGA 22556 30 100.0 35 .............................. AAGAAATGCTCAAATAACTTGTACATTTCTTTTAA 22491 30 100.0 35 .............................. ATAGAAAGATAAACTTTTGTAGGAGATACAAAATA 22426 30 80.0 0 ..............G.T...AA...A...G | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 96.0 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CAAGCGTAGCACCAAAAGAAGCGTATGAAAGCATA # Right flank : TCAAGACTTTTTTAAGAAAAATAACAAATATAAGCAAAATTATTGTATATTTTTTAATAAAATATCAATTTTACCTTTAATTTCTCTTAATAGCCTAAAACTTTCAGCAGCGTTTTTTTCGAAATCCTCCAAACGGTCAATTCTATTCTCAAGTATTTTTATCTTTTGATTTATTAACCAGTTTAAAGCTGTTAAAGCCAAGACCACTATAGTAGTAACAGGCTCTAAATAATTTAATATATCCATTACGAAGCTACAACGCCACCAGCTGCGATTTGAGCAGTAAGACCTATAATATAAACTTCATCAAATTTTACGTTGTTGAAAGTTTTGTTTAAAAGGGCTGTTCTTATTTCATCCTCGTTTAAATTAGCCCTAGCAGAAAACTGGAAAGTATGTTTAAATCCAGCTAAACTTTTACCAGTTACAGTTACAAGGTTAGAACCACTAGCTATGCCTTTATCAACAGTGTCCTTCGCCTGATAAATTTCATAAGTTCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 2532-1085 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYB01000030.1 Campylobacter fetus subsp. testudinum strain wqj11 contig00030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2531 29 100.0 36 ............................. TGAATAAAACAGATAGTTCTGTTACTGCTAATTCTA 2466 29 100.0 36 ............................. TAAATTTATATCTAAACTTTCTACAGATTCTTTCGT 2401 29 100.0 37 ............................. TAATTCTCTTTATAGGGATAGATGTATGAGCGAAAAT 2335 29 100.0 37 ............................. TATTTTTGACGAATGTGATCCAGACGGAGATGCGGAA 2269 29 100.0 37 ............................. TCATTTATTAGTTTTTTCTCTAAAGCCACCAGAGCGT 2203 29 100.0 37 ............................. TTGCTCTATAAGACCATTTTGTATAAAATGGTGGTGC 2137 29 100.0 38 ............................. TACAAATATTTTTGAAAGCAAATACTTTGTCAAAATTT 2070 29 100.0 37 ............................. TTAAAAATTGCCGTTTGCATTTTCTTTAAAGAAATGC 2004 29 100.0 38 ............................. TCTCTGTGTAGAATTAGAAACAATATTTGCAAATTCAA 1937 29 100.0 37 ............................. TTTGCTATTTGCAAATTTTGCAGGGACGGCTTTACCA 1871 29 100.0 37 ............................. TTTATAAATAGCCTGTTCTATTTCACTTATCTCTTCC 1805 29 100.0 38 ............................. CTTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 1738 29 100.0 37 ............................. CGTTTTTTCCTTTAAAATATCGTGAGCTTCCTCTTCC 1672 29 100.0 37 ............................. CTCGCCTATGAACAGAGCTAGTCCGTTTTCATTTATT 1606 29 100.0 36 ............................. CAAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 1541 29 100.0 37 ............................. CATGAAATTTCCGTTGATATAAAAAATAAGTTTAATG 1475 29 100.0 36 ............................. CATGATACAAAGCGTGGTTGGTAGATATTATATTTC 1410 29 100.0 36 ............................. CAAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 1345 29 100.0 37 ............................. CACGAAATTTCCGTTGATATAAAAAATAAGTTTAATG 1279 29 82.8 5 ..................A..ATA.C... TTTAA Deletion [1246] 1245 29 96.6 37 ............T................ CACTTTAGTATTTAAATAAGCCGTATTAAAAGCGTTT 1179 29 100.0 37 ............................. CCAAAGCAGGTTTTAGTTCATCACGTTAAGCCTTCTA 1113 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.1 36 GTTTGCTAATGACAATATTTGTGTTGAAA # Left flank : TGGTTGGAGAGCAAGGGATACAAAGTGGATCTAGT # Right flank : CAAGTTCTTTTTTTAATGGAAATGAGATAGTGACTTGTTATAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAAGAGATCACTATATGATAAAAAAGAGGTGATAAAATGGAAAATCGTAAACTTATTATAGGGTACTATGGAATAGAATGGGCTATAAAAGTTCCTGACTATGATGATAAAGGAACAAAAGGCTTAGGGATTATAGCCCCCATAACTTCAGTAAAAGACGGCAAAATAGTTGAAGTATTCGATATCCTTACTCCACACAAAGAGGATATAGATGATGCAAAAGAGTATAAAGAATTCTATGAGATCTGCGATTTTGAAGTACCACAAACTAATCATAAATTCACAGGCACTTTTATAGACGCTTTAGAATATATAAAAGATACCTTTAATCAAGTTTCAAAGACTGTTTAACATTTGACGGCGACAGGCTAATAACAGCTTTTAAGCCGACGCAAGGATATATCAAGATATTTCAAAG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //