Array 1 230850-231244 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJH01000004.1 Erwinia sp. AG740 Ga0222371_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 230850 29 100.0 32 ............................. TGGAAATCACCAGCGGCGGAATGGGTCAATAT 230911 29 100.0 32 ............................. CGTCGGAGATATCGCCGTCATCGTCATTCCTT 230972 29 100.0 32 ............................. CGTCGGAGATATCGCCGTCATCGTCATTCCTT 231033 29 100.0 32 ............................. CTCCTTTTCTCTCTCGTCTTCGTGAGCGAAGT 231094 29 96.6 32 ............T................ TTCAAACCCGGCAGGGGCGATATAGCTTGCAC 231155 29 100.0 32 ............................. CGAACAAACCCGCGCACGAAATCGCGCTCAGA 231216 29 89.7 0 .........................G.GT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAACGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCACTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACATCGGTGGTAATGCCGGTATAAAGCCACCCGCTGCCGGTGCGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACAAGCATCATCGGTGGATATGGGTGAGTAAAATTACCACCTTTATTTATCAATAGGTTAGCGCTCTTTAATAACGTGAAAAAGTTGGTGGAATTTTTCAGGATTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TTGCCGTGATAGCACGGCACAATCCGTCGCGATGTGTTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTTTAATTTCTTTTTTATGTGAATAAAACCACAAAAAGGGTTGTCATCTCCGGGTGAAATAACGGTATTCGCCGGAGAGATGACCCTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACTACCCTGAATGATGACGACACCGATGAAAAGGTGACGGTCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCTGCTATCTGTATCTACCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGTACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGACGACATTGATATCGCGCTGGCGGAAACGAAAGCGGCCATCGCTTATGGTGCCGACGAGGTCGACG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 125217-126466 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJH01000012.1 Erwinia sp. AG740 Ga0222371_112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125217 29 100.0 32 ............................. AGTGCACCTCCATCCTATTGACTAGGTATGCC 125278 29 96.6 32 ............................A ACTCTGGTTTCGTTGCAACTGGATGCATTGCA 125339 29 100.0 32 ............................. GGTGCTTGCAGCGATAGCTGCTGACCGATCTC 125400 29 100.0 32 ............................. CACCTCATAGACACGGTTAGATTTACCAATTG 125461 29 100.0 32 ............................. CGTACGAAGAGCGGCTGAACGATGATCCGCAC 125522 29 96.6 33 ............................C AGTACAGGCAGTGACTCATAAGCACCGCCCGGC 125584 29 100.0 32 ............................. CCATCACAGATGATGCAAGACATTATCGCGGC 125645 29 100.0 32 ............................. CAACTGATAGCTTTTGCCCCATAAGCCACGGC 125706 29 100.0 32 ............................. CGCCTGCCGGTTTGGAGTCTGGCGGAAGATAA 125767 29 100.0 32 ............................. GGATTGCTAGATTTACCGCAAGTGGCACGTTC 125828 29 100.0 32 ............................. CCAGCTCCAAACTGGTCAACCATCAATGCACC 125889 29 93.1 32 .A...........G............... GAATAACGGCCAACAATTATCTCAAATCCCTA 125950 29 96.6 32 .....................G....... GGGCAAACAGTGACATTACATCACTGACCGGG 126011 29 96.6 32 .....................G....... TTAGTGAAATACGCAAACGAGTATCCGGGCCT 126072 29 96.6 32 .....................G....... TTGCTTGATGAGATGGAGTCTTGCGTTAATAA 126133 29 96.6 32 .....................G....... AATATCCAGCTCGCCAACTGCGACGAATCCCG 126194 29 89.7 32 ......T..............G......C ACAACGCAGGTGGCCACTACGGCGTTTGTGCA 126255 29 93.1 32 ..A.........G................ ATACATATGGGAATTGGCATTGGTTTGCTAAC 126316 29 96.6 32 .........A................... TCAGTTATCGCATGCACAAAAGCCGTGGTAGC 126377 29 100.0 32 ............................. GAGCCGGAAAGCGAGAAGGTGAAGGTGGATGA 126438 29 86.2 0 ..A........A..............T.A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGTGAGATTGATCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGGTGCCGTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTTTGGCTGCTGGAGGTACGCGCTGGCGTCTATGTGGGTGATACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAACTGGCCGAGCAAGGCAATGTGGTAATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGCGAAAACCGCCGGATGCCGGTGGACCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCCGTTGAAAATCAGTAAGTTAGCGCTCTTTAACAACCGGAAAAAATCGGTGGAATTTTACAGTCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : AGAAATAAATCGGGCACGCTGTGTGATTACGCGTGCCCGATGTGGGTGACCGTCAGACAGGGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTGGCGGCGGGTTTTTTGAGCGCCAGTGTCTTCGCTGCCGGTGCGGATGAGGGCGCAATCATCGGTCGGTTGCCCGCCAGATTGTAAGAGCCGCCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCAGCCTGCTGTTGCAGGGATTGCGTGGCGTTGTAGCCTTCTCTGACCAGCGAAGCATTTTGCAGTGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCGACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGTCGGTTCCCGGCGTCCACCGTTTCTACCGAATGGCCGATCAG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 155788-156537 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJH01000005.1 Erwinia sp. AG740 Ga0222371_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 155788 28 100.0 32 ............................ TGAGTCATGCCAGCTGCTTCGCGAGCTTCCTT 155848 28 100.0 32 ............................ AACTGTTGTTGACGCGCTGGTTGTAACATTCG 155908 28 100.0 32 ............................ ACGAACGCCGGGTAAGAAAAGCCGGTTTTGTT 155968 28 100.0 32 ............................ GGCAAGAGTTATCACTTAGGCAGCTTAAACGT 156028 28 100.0 32 ............................ AACGCGGAGCGTGCAGCAAAAATGAACTGGGA 156088 28 100.0 32 ............................ TTTCTTCGTGCTCAGGTCTGGCGCTTCGTTAA 156148 28 100.0 32 ............................ AACAATCTCTTTCACGGTCAGGTACATAATCA 156208 28 100.0 32 ............................ AACAATCTCTTTCACGGTCAGGTACATAATCA 156268 28 100.0 32 ............................ AGCCAACAACGTAGCGGGTACGCCCATCGATG 156328 28 100.0 32 ............................ AGCCCCAGTCGGGCAATCTGGATAACAGTCAG 156388 28 100.0 32 ............................ GTAGAGACGTTTTTGCGCTGTAAAACGGCGGT 156448 28 100.0 32 ............................ GTGACATGTGCTCGCTGTTCAAGTGGGCGACG 156508 28 85.7 0 .......................G.TGG | GG [156529] ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.9 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGAAATCCCGCCCATGGCGATATCGCACTGGTCAGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTGTACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCGCGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCAGCCAGCCCCAATAACAACATCAATGAAAACCGCTTTTTCATAAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACGAATATCGCTTTTGACCCTTTTTTTTCGCCCCGTGATAACTCGTTGATTTTTAATGATGATAAAGGTGGGTTTGAAAAAAGGGTTTCACGACCCAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACCGTTTATCCCGCACGAAACCACCCACCGCCCCCAACATAAATCAGGCCACAGCAAAATCCTTGCTGTTTACCAACAGCCCCAAAACGCTACTCCACCGTCAATACCGCTACCGCCTTTTTGCGCTGTTTGATGGCATAACCCGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAAAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCAGCGGGTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 162570-161581 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJH01000005.1 Erwinia sp. AG740 Ga0222371_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 162569 28 100.0 32 ............................ CAATGGTGGTAGTCGTGACGTTTCATTTCCAG 162509 28 100.0 32 ............................ AAAGTCAAACAGAGGATAGTATGGACACGACA 162449 28 100.0 32 ............................ GCGCACTGAAGAAGCTTACGAAATCGTTGCTT 162389 28 100.0 32 ............................ TGGGCAATGCAGCCGCCATCCGACTCTCGCCA 162329 28 100.0 32 ............................ CATGCGCTGACGCGCCGGGCTGAATCCTTCAA 162269 28 100.0 32 ............................ GATTGAGGCATGGAATGGTGGCTGGGATTCGG 162209 28 100.0 32 ............................ GCTAAGGACCGCCACCCAAAAGGTGAAGACGT 162149 28 100.0 32 ............................ ACCAGCATGGCAATGGCCGATGTTCCGTAAAT 162089 28 100.0 32 ............................ TGACGCCTGAGATATTGCACGCTCAACGATCT 162029 28 100.0 32 ............................ TTTCAGCAGGTAGCCGATTTCGTGGCAGTTCC 161969 28 100.0 32 ............................ ACTTAACGCCGCGTTAATCTCGTTAATAATGC 161909 28 100.0 32 ............................ AACCAGAGGCAAACTCCAACCCTGCTGAATTC 161849 28 92.9 32 .............T.....A........ TTTCAGCTTCACGAACAAATGCGAGTTGCCGA 161789 28 96.4 32 .............T.............. TTGAACCAGGGAGCGGCGTGATGGCACAGACG 161729 28 92.9 32 ...........T.T.............. ATCACTACACGCGATCGATGGGCGATTATCGA 161669 28 100.0 32 ............................ CGCCGGTGCGTTGTTCCAGTTGTCGGATTGGC 161609 27 89.3 0 .......................-..CG | GG [161586] ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGAGGCACTGCCGGTACCAACGGGTGCGCAGTACCGCACCGTACGCCGGGTGCAGGTGAAAAGCAGCGCTGAACGCCTACGCCGCCGTGCTGTGAGCAAGGGCTGGCTGACCGCGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGACAAACCGGTCACCGGGGTGTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAGGGTTTTTTCGGAAAAACGGCGGTTTTTCTTTAACAATCAGGCGATAAGCGATTATTCGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGTACCGCGTCAGCGGCGTAGTTTAGCCACCCAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGTAGCCCCCCGGCTGTGTGTCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGTACGTTGTGATGGTTTAACCCGGCGATGCAAACACGGCCGCTGGCGATGAGATACACGCCGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 171160-172208 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJH01000005.1 Erwinia sp. AG740 Ga0222371_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 171160 28 100.0 32 ............................ ATTACAAGACTGGCAGGAGTTTAATTTTTCAT 171220 28 100.0 32 ............................ ACTAGCGCAACATGATTTCCGCGCAAATTGCG 171280 28 100.0 32 ............................ GGACAGGACGCCGGAATGTTTGTGTGTATGCA 171340 28 100.0 32 ............................ TCGGCATAATCGCGGCTAAACCCACTCATATG 171400 28 100.0 32 ............................ TTGATGACTCGTTGCTGCGTTGTGTTGGAATG 171460 28 100.0 32 ............................ GCAGCCAGAAATGGCAATGCAGCAGTAATGAT 171520 28 100.0 32 ............................ TTGCTGATGTAGCCATTTTTACACCGGGGCGG 171580 28 100.0 32 ............................ GCCCCCTGCAGAGCCGCCATCGAGGACCCCAT 171640 28 100.0 32 ............................ GGTTGCTGACGATGCCGACTGGTTGCCGGTTG 171700 28 100.0 32 ............................ GTTATCTGACAGGATTTTACGTACCTGCGCGG 171760 28 100.0 32 ............................ TGGCCATAGAGCGCCATGCGATTCGCTTTTGC 171820 28 92.9 32 ...........AG............... GCTGAGGTGACCATCGAAACCCCAAGGTTCGA 171880 28 89.3 32 .........T.AG............... AGCAGACGACCCGCACCACATCATCGGGCACG 171940 28 92.9 32 ...........AG............... TGCGGGGGGATCGAAATGTACTCAGAAACCAC 172000 28 100.0 32 ............................ AATGGCTGAATCATTTGTGGCGATTTTGCTGC 172060 28 89.3 32 ...A.......AG............... CATCCGATCGCACTCGGCGTGACCTCGATAAC 172120 28 92.9 32 ...........AG............... ATAATTAAGCAGTGACGATGCCACGACGATGC 172180 27 82.1 0 ...........C.C.........-..CG | GA [172201] ========== ====== ====== ====== ============================ ================================ ================== 18 28 96.6 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTGACCGAAGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTTCCTTCTTCGGTGACATATTCCACCCTCCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCACGCAATGATACGCAGGCTAATAGTTCGCCAGAAACATGTAATACACTGGAAAGTAACGAGAATTAACCTAGCACAGCCCCAACGGGAAAGTGAATGACGCCGAAAAGACTTTCCTTATTTTCATACCCTTTTTTTCCGCTGTCTTTTTCGATATTGAAAAATCAATAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCGGGTCAGAATACAAAGGGTTAGAGTCAACGGGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCAGGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTTACGCTTTCAGGTACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTCCACCACACTACCCTATACACTACGCCCTTAATCCAACAGCGCGTTCCCCCGCTTCAGGGATATCTGTCAGAACGACGTCCAATCACTATTGCTACCCGCTGCCGCGGCGGCCCGCTTTTCCGGCAGCGCCGGAGATAGCACCGCTGACGGACGGGCTGGTGGCGTTGTGCCGCCGTGGCCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //