Array 1 27002-22981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGR010000013.1 Porphyromonas levii strain DD23 JD36_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 27001 32 90.6 36 .....A......G....T.............. CGTTTGCACAAGGGCAAACTCCCGTCCTGTGAGTGC 26933 32 90.6 34 .....A......G....T.............. TTGACCGATGCGGGGTACATCAGCGTGTATCGGT 26867 32 90.6 34 .....A......G....T.............. CCTAAGGGTGAGAAGATACGCGTTGTGGCGATAC 26801 32 90.6 36 .....A......G....T.............. TGCAATACCTCCCGAACTGTCTTACCATGCCGCCTT 26733 32 90.6 34 .....A......G....T.............. GTCAAAGCTGACAGCAACAACCCATCCTCGTACA 26667 32 90.6 35 .....A......G....T.............. GAGAGATCTGGTAGCGTGACAAGCTCCTCCGCACC 26600 32 90.6 35 .....A......G....T.............. GTAAACATGCTGGCAGAGCTTACGGCAAGCAGCCC 26533 32 90.6 34 .....A......G....T.............. AACTTATAAAGAGAGGAACAGATGGCAGATTACA 26467 32 90.6 35 .....A......G....T.............. CTTGAGTCTATCGTACACCCTCTCGCCATACGCAT 26400 32 90.6 35 .....A......G....T.............. CCAACTCAAGAGACACCGCCCCAGAGAGTGGGTGG 26333 32 90.6 35 .....A......G....T.............. CCGTCTGCCGATGTAGCATAAGCGATGTGGAGGTA 26266 32 90.6 36 .....A......G....T.............. TCGGGATGTGGTATCACGCTGAGCATTGACGGAGTA 26198 32 90.6 35 .....A......G....T.............. GTCATTGTTCGTTGTGCTCGTTTTTACCTGTTAGC 26131 32 90.6 35 .....A......G....T.............. GGTTAATCCAAAACATGGCATGTACAAAGATTTTA 26064 32 90.6 34 .....A......G....T.............. AGCTCTCCACGTGTGAACTTAGGCTCTATCTTCA 25998 32 90.6 34 .....A......G....T.............. CGTTAGGCGCATACCTGATTTATTGCTACTCCCT 25932 32 90.6 34 .....A......G....T.............. GTAGATATCGCTCCACTGCTCGTCTGTCAAGCGC 25866 32 90.6 34 .....A......G....T.............. GAATACGCATAAAGATGTACATTTTTTAACTTAT 25800 32 90.6 34 .....A......G....T.............. GTTAAAGTAGAGCTTGCCAGACCTCTTATAGTGA 25734 32 90.6 35 .....A......G....T.............. TTTTAGTCTTGGGAGGACATTACACTCTATGTAAC 25667 32 90.6 36 .....A......G....T.............. GCATTGTAAACGATAAGACCTACACAATGTAAGTCT 25599 32 90.6 35 .....A......G....T.............. GAAGACATATACAAAGAGGCTGAGGTCAACGGGCT 25532 32 90.6 33 .....A......G....T.............. ATGCCTTTTGCTTTTAGCTCGTGCCACTCCTCC 25467 32 100.0 36 ................................ TGTGTGTATCTTTGCCATGAAGTTATTAATTTCTGC 25399 32 100.0 34 ................................ ATCGGCAAGAGCAAGGTGCTCAAACGCAATATAG 25333 32 100.0 35 ................................ CTAGTTATCCATCTGCGATAGATATAGTGAACATG 25266 32 100.0 34 ................................ AAAATAAATCTACTACATTTGCAGTGCGTTTTTA 25200 32 100.0 34 ................................ ACCACCATTAGCGGTGCGGACAGGGAGACGACGT 25134 32 100.0 34 ................................ ACAACGTACCTCCAGCAGGTACACACTACGAGGC 25068 32 100.0 35 ................................ CAGAGTATTATGCTGTAAAAGTGACCGGTGGCAAA 25001 32 100.0 34 ................................ GAGCTAGAAGAAGCCGTAAGGCTCGAATTGAAAA 24935 32 100.0 34 ................................ TTGGATACGATAGCGAGAGCTATTTCTCGCAGAT 24869 32 100.0 33 ................................ ATACATGCAAAATTGAAATATAAACTACTAAAC 24804 32 100.0 34 ................................ ATCTCTGCAACTCAGGCAGGTGGTAAGTTCCATA 24738 32 100.0 34 ................................ ATCGCTCCAAAGGATATGAACCTGTTAGTTATGT 24672 32 100.0 34 ................................ ATCTGCTAAGCTCTTGCTGTATGGTATGCGCTCA 24606 32 100.0 34 ................................ AATAACGAAGAAGCAAACGAATCGGCACGCCTAC 24540 32 100.0 34 ................................ TGTTATGTCGCATATTGTCAGACAGCTTATACGA 24474 32 100.0 34 ................................ GGAATCATCGGAAAATGGAAGAGAGATAGAGGAC 24408 32 100.0 35 ................................ AGCGAAAGGTAATGCAGTCGGCAGGAACCACGAAA 24341 32 100.0 35 ................................ TGCAGACTGTCGAGCAGGTATTGTATCCCTGCCAC 24274 32 100.0 34 ................................ CGTCTGCCGATGTGGCGTAGGCAATGTGGAGGTA 24208 32 100.0 33 ................................ GTTCGTTCGAGGTAAGCGTCATACACGTAGTAC 24143 32 96.9 34 ...........................A.... CTATAAACTAGGAGGGGTAGACTTCGAGGAGTAT 24077 32 100.0 35 ................................ TCACCCTTGATGAGCGTCCACTTGTACTTGCGCGG 24010 32 100.0 34 ................................ TTGTAAAGTTTAGCAGCAGGACAGGCGACCGCTT 23944 32 100.0 34 ................................ AATAACCTCATGGAAAAGCAGTCCAAGAGCCTCA 23878 32 100.0 33 ................................ ACTACTCTACTGGAGAACAGATTGAGACGCAGC 23813 32 100.0 34 ................................ GTTGAGTGTTCCGTCTCGTCTAATAACTTGCGTG 23747 32 100.0 34 ................................ TTGCGTTGGTTCTTGCGTTGGGCGGCTCAAAAAG 23681 32 100.0 36 ................................ AGCCAACAAAGTTTCCGGGTAAAAACTCGTCTAATC 23613 32 100.0 35 ................................ ACCACCTACACTGATAGACTCGTGTACAAGTGGGT 23546 32 100.0 35 ................................ ATCGACACACTCAACCGAGTTCCGTTCGATAGCGT 23479 32 100.0 35 ................................ ATCAGGTCAAGATGTAAAAACGACACTTAAGACGA 23412 32 96.9 35 ..........G..................... AAAATAGGGATGTCCTACTATGTAGTCTATGTCGC 23345 32 100.0 36 ................................ ATCATTAGACCCAGCAGCGACAGATTGGGCAGGCTG 23277 32 90.6 33 .....A......G....T.............. TTACATGACGACAGGGAGCGTGTTAGAGGTGTA 23212 32 90.6 35 .....A......G....T.............. AACCGCAAACAACGTAAGATACTTGACAAAGTCGA 23145 32 90.6 34 .....A......G....T.............. AACTTGGAGACGGTGTATAAATCCGCACCAAGGG 23079 32 90.6 35 .....A......G....T.............. TCTTCATCTATTTCTAGAGATAGAACATTACTTCC 23012 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 61 32 95.7 34 GTCGCTCCCCACACGGGAGCGTGAATTGAAAC # Left flank : TTTCATAATGAGATAAATATGTATATACTAGTAACATACGACGTAGCTACTTCCACAAAAAGTGGAGAAAGACGACTGCGAAAAGTAGCTAAAATCTGCCAAGACTATGGACAACGAGTGCAAAACTCTGTCTTTGAATGCTTAGTCACCCCTGCACAAAAGGTACAACTAGAAGCACAATTACTTGACGTAATAGATCAAGAGCACGATTCCCTGCGCTTTTATCACCTAGGCAGTAACTATGCTAGCAAAATTAAAACCCTAGGCAAGCAAAAAAGCTTTGATATCGAAGAAGAGCTGATTATCTAAAGAAAGAGTAAATGAATGATGAGGTGCGAACCTTAAGCAAGTAGCGAATCCCCTAGGTAATCGCACACACTATATTTCAAGGAGTTATAAAAGAAATATCTTTGGGTATTGAGGTGATGTCAGTCTGTAGGAACCCACTCGCGAAACATAGCTTTCAAAGTCATAAATAATCAGTATCTTTGTACTGAACG # Right flank : AAAAAATCATTCGTCTCAAGTTTGCCTGAACAACCTCTATATCGATAAGCACCGAGGGGTAAGCGAGCGGCGGTCGAGAGTTCTCCGAGTACCCCACGGAGAGTTGCCCTGTATTCATACTCACTTGCCTAAGCGTAGGCACAGCCTCAGTGAGCTTGCTCTTGATGTCTTGATAAACTGTTTTCATTTCAACAACTCCTTTATGTCGTTAATAACTTCCTGCCGTATCTCTTGCGCCATCCGCTTAGACGCTCCCATAAATGGTCGCTTCGGCATGGCAAACTCTTTTTTGCCATAAACCTTAGCCTTAAGTCCATATTGATGCACCCTCGCATATGGGGCGGTATTCCTAACGACAATACCCTCCTTTGTGCGCGCATAGCTAAACGCATTGGAGAGATGCCCCGTTTCTCCAGAAAGGATTTTCGCCGTTGTGCGCGCAAGACTAAAGCGCCCGGTCTGACCGCTATGACCATACCAAGAGCTTTCAGGTTTTCGCC # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACACGGGAGCGTGAATTGAAAC # Alternate repeat : GTCGCACCCCACGCGGGTGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //