Array 1 28273-26982 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXD01000149.1 Pseudomonas aeruginosa strain VET-58 PA2_E4_NODE_72_length_28618_cov_12.3623_ID_143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28272 28 100.0 32 ............................ GTATCGACTGTGATGGATGCGACAAGCACCGC 28212 28 100.0 32 ............................ ATCTTGCGCAGGGCGTAGACGCATACCAACCA 28152 28 100.0 32 ............................ GGCATCCTCGACATGCTCGACGGCCTGCCAAT 28092 28 100.0 32 ............................ GAAGGGAGAATGCGCAGACCGGAAAATTGCAG 28032 28 100.0 32 ............................ TCGCCGACAATGTGGCGTAGCTCCCAACTCGT 27972 28 100.0 32 ............................ ATTCATCCTGCGGCATACGCGAATCACAGATG 27912 28 100.0 33 ............................ ACCTTCGGACACCAGCACAACACGCGACGTCTT 27851 28 100.0 32 ............................ TGGCTGATGTTCTCCATTTGGCCCGGCCCATA 27791 28 100.0 32 ............................ TTGGAAAAGCGCCCGCTAGTGTCGAGCAGCTT 27731 28 100.0 32 ............................ GAGCGCACCTGCCTGTCCGAACGTGCCGTGCA 27671 28 100.0 32 ............................ GACGCGATCTGGATGGCGCCTTTGCCGTTCAC 27611 28 100.0 33 ............................ TAACTTCCCGGATATTCAGCCGCGAAAACTTGG 27550 28 100.0 32 ............................ TGGAGCCGGCCCAAATCTCGCCACCTTCAACT 27490 28 100.0 32 ............................ ACCGAGGAAGCCGAGCGCGTCGTTCTCCAACT 27430 28 100.0 33 ............................ ATCGGCATCAAGGGTTCGCTTCGCCGGCATCCT 27369 28 100.0 32 ............................ AGGGAACACGGTATGGAACCGGCCGTGGCCGC 27309 28 100.0 32 ............................ ATCCGGCCTCCGGATAACATAGACCTGCTTGT 27249 28 100.0 32 ............................ ACATGCCGAGCAGTTCTTTCCGCCCAGGCACG 27189 28 100.0 32 ............................ TCTTCAAAGGTCAGGCCCCGGTGCGCGAGCCA 27129 28 100.0 32 ............................ GCGACCCCAGCGCCATCCTGGTGGGTGGGTTC 27069 28 100.0 32 ............................ AGTACCTGCCCGAGCGATCACGCCACACGCCG 27009 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGTCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCAGACAGGAAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAACAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGTGAATGCCGCCATAGACGGTATCCGCCGATCCCCGGACAGCCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCGGGCTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGTCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCACTAAGCAACAGCGCCCCCCCTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55102-56931 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXD01000159.1 Pseudomonas aeruginosa strain VET-58 PA2_E4_NODE_22_length_65098_cov_10.9109_ID_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55102 28 100.0 32 ............................ TTACATTTTTTTGATAAAGTCGAGTACGGCCT 55162 28 100.0 32 ............................ TGCATGGAGTCGCAGACGCCTACACGCATCAG 55222 28 100.0 32 ............................ GCCTTCGGTCGCGTCGGCCGCGTGCGCCGGTT 55282 28 100.0 32 ............................ AAGCTCAAGCAGTCGATCAGCGGGCCGGTGGC 55342 28 100.0 32 ............................ GTACCGGCTCGTCCCTCGCCCGGCCCGGCCAC 55402 28 100.0 32 ............................ AAGGACAACCGTAGCCTGATGGACGTTGCGCT 55462 28 100.0 32 ............................ AGGTCCAGGTCGGTGCCGAGCGGGATTTCCTT 55522 28 100.0 32 ............................ AGCTCGGGCGGCAGCACCACCGGTCGCCGGTC 55582 28 100.0 32 ............................ TGCACGTCGAGCCATGCCTGCGGCATCTGCCC 55642 28 100.0 32 ............................ TACATCGACGGCCTCGGCACCCAACAGCCGGT 55702 28 100.0 32 ............................ GGCGCGAAAGCCGTTCCAGCCGAACTTGTCAG 55762 28 100.0 32 ............................ AGGTTGCGACGGGCTCGCGGAAACCTGCGACA 55822 28 100.0 32 ............................ TGTTGACGGCGGCGCGAGCGGCGGCCGCGTCC 55882 28 100.0 32 ............................ TTGGTGGCGTCGGCGTCGATGTGCAGGCCCGG 55942 28 100.0 32 ............................ TCGTTGACATGAACGCAACGCAGGCGGCCATC 56002 28 100.0 32 ............................ TCGGGCCTTCCTCGCGCAGGCGCTCCACTGAG 56062 28 100.0 33 ............................ ACCATGGCGGCACGGCCAGGTGCGGCGACTTAT 56123 28 100.0 32 ............................ ATGACGAGCCCTTACCCAGGCTCGGAGAGCTA 56183 28 100.0 32 ............................ AGGTTGATTCGGTAATTCACGATGTCGCCGGA 56243 28 100.0 33 ............................ ATTGACCAGGTGTTCGCGAAGCGCATCGATCAA 56304 28 100.0 33 ............................ ATTATGCGAGGCGACCCTTTTGGTACCTCTTTG 56365 28 100.0 32 ............................ TCATAGTTGAAGGCGTCCTCGCCGCGCAGCAT 56425 28 100.0 32 ............................ TGGCGCGTCGCGGATCTGCATCCGTACCTCGG 56485 28 100.0 32 ............................ TTCGAGATCAGGTGCATGAGCATTTCGCGCAG 56545 28 100.0 32 ............................ TAGAGACGCTGGCAGAGCTGGCCACCTGGTGC 56605 28 100.0 32 ............................ GCTCGGCTCGGCCCATGCCGATCCAGCGATGA 56665 28 100.0 32 ............................ GCGTATGAGTATTCGGGTCAACGTCCGGCTTA 56725 28 100.0 32 ............................ GGCGGTATAGGCCGGCAGTTGGCCGTCTGGGT 56785 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 56845 27 89.3 32 A....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 56904 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 31 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGGTGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //