Array 1 14073-11295 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJXK01000003.1 Salmonella enterica subsp. enterica serovar Oslo strain SO1 SosW_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14072 29 100.0 32 ............................. CAGCGCACTACCCGGCAATAAATCTCCGAATA 14011 29 100.0 32 ............................. GCGGTATTCACGGATGTATCAGCGAGCAGATC 13950 29 100.0 32 ............................. GCCCGCCAATTTGGCAGCGCGATGACGCAAAT 13889 29 100.0 32 ............................. CTGATATCGCCTCGTTAATTTCTTTTACAGCT 13828 29 100.0 32 ............................. AATTAAATGAAATACGACAGCGCACGTTAAAA 13767 29 96.6 32 ............................A TCCAGTCGGCGATGTTAAACAGTGACGCGACC 13706 29 100.0 32 ............................. GTTGCCGGGATATGGCGGAGAATTATATATCG 13645 29 100.0 32 ............................. CAGAAAGCGGTCATCACCTCCGTAATTGGTGT 13584 29 100.0 32 ............................. AAATCGACCGAAAATTCGGACAGTACAACGTC 13523 29 96.6 32 .................C........... TCCAGTGTTTATTTTAGACTCGCAACAATTAA 13462 29 100.0 32 ............................. GCGATTCCGTTGTCGGCCAGCTTCAGGCGGTT 13401 29 100.0 32 ............................. CTCCAGGCGGCCCCGACATATAGCGCTCATGC 13340 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 13279 29 100.0 32 ............................. GCCTTAGAAGATGACGACCTGATTTCAATTGA 13218 29 100.0 32 ............................. TAAATTTTCAAAACCAGCTTGTGATGGTTATA 13157 29 100.0 32 ............................. GGGATTTTGGATCGCCCGGTGATAGAGAATTA 13096 29 100.0 32 ............................. CGGTTCCATTGACCCGCGCTGCGGGCTGTCCT 13035 29 100.0 32 ............................. CACGTTTCCTGCCTAATAAATGGATGATGTCG 12974 29 100.0 32 ............................. GACAGTGCCCTGCTGTTGGGCGGTGTCAGCAC 12913 29 100.0 32 ............................. CGTGGAACTTTATCCGCACAGATTTCCTGCGC 12852 29 100.0 32 ............................. GACGCAGGGGTTACTGATGAACTGAAAAAGCA 12791 29 100.0 32 ............................. CAGCGGGAGGAAATTAACAGCCTGAAATCAGG 12730 29 100.0 32 ............................. GGAAACGCATATGAGCACACAAACAACCGGCA 12669 29 100.0 32 ............................. TACCGTTAACCAGCTCAATAAAAACCAGGTGA 12608 29 100.0 33 ............................. GTTGCCAGCGCAATTCCGTGAACACCCACAATT 12546 29 100.0 32 ............................. AGCAACATCGACAAACAGGCGCTACGTGAAAC 12485 29 96.6 32 C............................ TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 12424 29 100.0 32 ............................. GATCAATATCCGCCACCTCTTTACCATCAACA 12363 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 12302 29 100.0 32 ............................. TATCACGGATAGGATATAAACACGGTTAAAAC 12241 29 96.6 32 ............................C GGATGAAAGAAGGGCAGGAAAAAATCTACTAC 12180 29 100.0 32 ............................. CAAACGCCAACGCAACCACAACCCGCCATTAC 12119 29 100.0 32 ............................. TCGCTGTTAACCGCTCTCGCACTGCGTCAGGC 12058 29 100.0 32 ............................. CAATTGACGAGCCTTCCATATAGGACGCCCGC 11997 29 100.0 32 ............................. GCATATGGAGAATACATTTACTCAGTGAATAT 11936 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 11875 29 100.0 32 ............................. TTCTCTGGAATTATATTTTGTTCCGCACGTTC 11814 29 96.6 32 .................T........... TCATTCAGCGAACGCAGGAGAACCAGCCGCCG 11753 29 100.0 32 ............................. TTCGGGAATTTATTCAGCCAGACGACAGCCGA 11692 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 11630 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 11569 29 100.0 33 ............................. ACCGCTTTGTCGAACTCTCCGAACTGCGCCAGC 11507 29 100.0 32 ............................. CAAACTGTGATTATGTGCTGACTCAATCTTTT 11446 29 100.0 32 ............................. CTGACGGTAAAACTACGGTACCGCCGTAGTAA 11385 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 11324 29 100.0 0 ............................. | A [11297] ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31456-30330 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJXK01000003.1 Salmonella enterica subsp. enterica serovar Oslo strain SO1 SosW_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31455 29 100.0 32 ............................. CGCCATCATCGCGCAGCACTGGCTGGTGGATA 31394 29 100.0 32 ............................. TACGTTGACGCTGGCAAACGGCTCGATTTCGT 31333 29 100.0 32 ............................. CTGTTAACTCAGCGATGGGGAGTGTCGGTGGC 31272 29 100.0 32 ............................. CCTGGCGGCACACTCTACCGCCCGTGGTGGCA 31211 29 100.0 32 ............................. GCGGAAGGATTCGTCCATCTCACCGCGATCAA 31150 29 100.0 32 ............................. CGTGTTTTCATTCCCCGCCTCGCCTATTTTAT 31089 29 100.0 32 ............................. CCCCGTTAAGGGGCTTTTTTATGCCCGCCGTC 31028 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 30967 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 30906 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 30845 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 30784 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 30723 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 30662 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 30601 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 30540 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 30479 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 30418 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 30357 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //