Array 1 171190-172413 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFA01000002.1 Campylobacter coli strain PSU116 NODE_2_length_217324_cov_262.164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 171190 36 97.2 30 A................................... TCCATTCTCATGAAATATTTAGCCATTATT 171256 36 97.2 30 A................................... GCACCTGTTTTTGATTGAACGAAGCAACCA 171322 36 100.0 30 .................................... AAACTTTTTACAGCTTTGTAGAATATATAA 171388 36 100.0 30 .................................... TTATTTTCAAGTGAAAAGGAATAAAATGTT 171454 36 100.0 30 .................................... TTATTATAGCTAATACTGCTTTATTTTGAA 171520 36 100.0 30 .................................... GAACCTTTAGAGTATAACGATAATCAAGTA 171586 36 100.0 30 .................................... TTATGAATGTAATTTAAGTACAAGCTTTAG 171652 36 100.0 30 .................................... TAAATTGCTTAATTGTGAAAACCAATTATT 171718 36 100.0 30 .................................... AATCAAGAGCGCATAGGAAAAGATATATAT 171784 36 100.0 30 .................................... AAATAATTTCAGTAAAAACACTTGACAAAT 171850 36 100.0 30 .................................... TCCATTCTCATGAAATATTTAGCCATTATT 171916 36 97.2 30 A................................... GCACCTGTTTTTGATTGAACGAAGCAACCA 171982 36 100.0 30 .................................... GAGAAAATATAAAAAAATAAATAATTTCAA 172048 36 100.0 30 .................................... TTCGAATTCAAATTCCATTAAACATTTTCC 172114 36 100.0 30 .................................... ATGAAGTGTTTTAAAAAGGCTTAAAGGTAT 172180 36 100.0 30 .................................... ACAAAAGATACATATTTTATTGATAAAGAC 172246 36 100.0 30 .................................... AAATTTGCTTTATTTAAATTGGTTTGCCTA 172312 36 100.0 30 .................................... TATATATTAATTTTAAATTATTTGTCAAGT 172378 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.6 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAACATAAAGTTTGAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGCGCCAAAAGAATGTGAAATTTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGGTTT # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTCATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGTGTTAAATTGGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAATTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //