Array 1 4720-9466 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJSZ01000026.1 Clostridium sporogenes strain PA 3679 isolate NFL VT28_contig026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 4720 29 100.0 35 ............................. AAAAATAAAGATATGTCTTTTGAGAAGCTCACAAG 4784 29 100.0 37 ............................. GAATAACCTCTTCGTTATACCCCTCAATCCTTGCTTC 4850 29 100.0 38 ............................. TCTTTTTACAATGATGATGGAGAATTAATTAAACTACA 4917 29 100.0 36 ............................. TTAAACTAATAACAATAGTATTTATTACAGACTTGT 4982 29 100.0 37 ............................. TTTGATGAAAATATTTTGATTGATTTATTTTCGTTCA 5048 29 100.0 38 ............................. ATTGTATGGTGTCAGGAAAATGGTATAGAAATAGAAGG 5115 29 100.0 37 ............................. AGCGTTTGTTTATGTTGGCCCTACCAGGAGTGGTAAA 5181 29 100.0 37 ............................. AAGTCTAGGATATAGGGTAAATAAAGCAAATAATTAT 5247 29 100.0 36 ............................. AAATTTTGGGATGAGAAAAGAAAAAGGTATGTGCTG 5312 29 100.0 37 ............................. TCAGACAGCTTATTATTAATGATTTGAAAATCTTTAT 5378 29 100.0 38 ............................. TGCGTTATAGTTCAATTTTACGTTAATTAACGTAATAA 5445 29 100.0 37 ............................. ATTCTTTCTTGTTATTGGTTTATATTGAGCATCTCCT 5511 29 100.0 36 ............................. TTATTAGACTGTGCTAATTTTATGACTGTATCTGTA 5576 29 100.0 36 ............................. TATTGTGTAGTTCCTTGATATGGTATATCACAATAA 5641 29 100.0 37 ............................. TTACACCATTTTGGTCTATATAAAATAGTTAAATCTC 5707 29 100.0 37 ............................. TTAGAAAAATATATGTATTTAAGAAAGATAAGTGAAA 5773 29 100.0 38 ............................. ACATGGATCTAGATAAAAAAGCAAGTAGTGCAATGATG 5840 29 100.0 36 ............................. TTGAAAACCCTTCTTTTTCATATTTATCAAAGCACT 5905 29 100.0 38 ............................. TTGGGATTTTGGACACATCAAGATGTATTACGATATAT 5972 29 100.0 36 ............................. GACGAATATTCTAGTGTTTCTATTTTTATTCCTTGC 6037 29 100.0 37 ............................. TCTTCAAAAGTAATATTCACTTTCCTATCATCTTCAG 6103 29 100.0 35 ............................. GTGGCAGGGAGTGGGGCAACACTAAGAGCTTGCAT 6167 29 100.0 36 ............................. AGTGCTTTTCGTGTTTTTAAATTTATTCCATTTGCT 6232 29 100.0 36 ............................. TATAATCAGCATATCTCATTATTATTTTTGCATTTT 6297 29 100.0 37 ............................. TAAAATATTTTAGAATTATCTCCCTTTTGTATTCCAG 6363 29 100.0 38 ............................. ATGATAAATTAATTTATACAGATGATGAACTTATGACA 6430 29 100.0 36 ............................. TATGTCTACTTGCATATAAAACCCTGTAGCAATTTC 6495 29 100.0 37 ............................. TAAAATTGATTATAGTAATGAAAAAGAAGTAGAAACA 6561 29 100.0 36 ............................. TAGGCATATTGGAAAACAAAGATAAAGTAGAAAGCG 6626 29 100.0 37 ............................. CTCAATTCTGCTTGTAATCCTTGCAACATTTCCTTAC 6692 29 100.0 37 ............................. TTATTGCTAGAGGCATATACATTAAATGTATTATTTC 6758 29 100.0 35 ............................. ACTCTATGTTTAAACATACCAGACCACTTATAAAA 6822 29 100.0 38 ............................. CAATTCTCATATAATAGTGGTTAATCATATTAGCGAAG 6889 29 100.0 36 ............................. AATATATTATCTGTTTTAATTCCTAGCTGTCCTGCT 6954 29 100.0 37 ............................. TGGGTATTGGGAATTGGTGCTGCAACAGTTGCTGGAG 7020 29 100.0 37 ............................. TTTTAACATTATATAGCCCTCCATTTATTTGTTTTAT 7086 29 100.0 37 ............................. CAAAACAATCAAAATTAACATAAAATTTAAACATTTT 7152 29 100.0 37 ............................. GTAGAAGCAGATAAAAACTTAAAGGAAATAGAAAATC 7218 29 100.0 38 ............................. AAGAAGAGGAGGTAATAAAATGATAAATAAGTCAAAGA 7285 29 100.0 36 ............................. ATGTATAGAGATTTAGGGAATAATAAAAGTGTTCAA 7350 29 100.0 39 ............................. ATATATGGGAAAGGTTCGGAAAAGAAATAGACGAATATA 7418 29 100.0 37 ............................. TAGCTTTGTTATAACATATTACTTCCATTTTACTATC 7484 29 100.0 37 ............................. TTAGCAGTTGCCATTTGAGGATCATCTACTAACTTAA 7550 29 100.0 37 ............................. TAGTATTTACTAATTGCTCTTTTGAACCAACATTTGG 7616 29 100.0 38 ............................. ATACGTAAACCAAAATTATTTTGATTTAATTCCATTTC 7683 29 100.0 37 ............................. AATGCAGATGCTATTAACACGTCTATAAGAGACCAAA 7749 29 100.0 37 ............................. TAATATTATTTCGTGGAAATATAATTCATGAAATATA 7815 29 100.0 37 ............................. TTAGTGAAAACAATAGCATATGTATCAGCCACTTTTG 7881 29 100.0 35 ............................. TAATATTATTTCGTGGAAATATAATTCACGTAAAG 7945 29 100.0 37 ............................. ACGGCAGTACCTAATATCTCTGAATAAGCTTTATCTA 8011 29 100.0 35 ............................. CTGGTTACAATAAATTCATTTAACAAAACGGCATC 8075 29 100.0 37 ............................. GCAAATGGAGAAACAGTTATATGCTTAAGTTGGTATT 8141 29 100.0 37 ............................. GAAACTACTTTAATATATGCAGATTTAAATCAAGAGA 8207 29 100.0 38 ............................. TAGAGAAGATAGCCAAGATTATCAATGGATTAGTACAG 8274 29 100.0 36 ............................. GGATTATATAATTTTGCTATAAATAAATTAGGATAT 8339 29 100.0 36 ............................. ACAACTAGATGTTGGAGATAATTTATTCCGTTACAA 8404 29 100.0 36 ............................. ACATAGTTATAGCAACAGTTACAATAGTATCTTACG 8469 29 100.0 37 ............................. AGTACTTATTTATTGAGAACGTTAAAAACTTACTTAG 8535 29 100.0 37 ............................. GTATTTACTTAATAGAATATATGGTAATCCCACTAAT 8601 29 100.0 37 ............................. GCGACAGGCTTACAAGTAGTTGCTGTAGATGGTGATA 8667 29 100.0 37 ............................. ACATATATAGACATAGAAGTAACAATAAACATAAAAC 8733 29 100.0 38 ............................. GTAGCTTTATATATAAAATATGATGAAGTCAAAAGTAA 8800 29 100.0 38 ............................. TTTTCTAAAAAGCAAAGGAAAGTATTGAATTGGTGGAC 8867 29 100.0 37 ............................. GAAGAAGATTTATTATTAGCTAGAGCATTAGCTGATA 8933 29 100.0 36 ............................. AAATCAATTTGATGCTTTAGTATCTATGGCTTATAA 8998 29 100.0 37 ............................. AAAAATTCAATTAACAGATGAAGAAATAAATAGATTT 9064 29 100.0 38 ............................. GATCTAAACAATAATGTAACCTATGAACTTAAAATAGC 9131 29 100.0 82 ............................. AAAGGAACACCAATATATGCAGTAGCAGATGGTACTCTTTTATATTAACCTAGAGATTTTAATATAACAATTAGAACAAATA 9242 29 86.2 37 A...........T......G...A..... AGCAGTAAAGAACTTATATTAGAAGAACTTATAGATG 9308 29 96.6 37 A............................ AACTTCATGGAAGAGGTAGGAGGTTATGTATGGGATG 9374 28 93.1 36 ...................-G........ TAGCTTTTTTATTTCTAACTCCGTCTTCCTGTTCTG 9438 29 75.9 0 A...............AG.TGG..C.... | ========== ====== ====== ====== ============================= ================================================================================== ================== 72 29 99.3 37 CTTTTATATTAACTATGTGATATGTAAAT # Left flank : AGGTGATGATATATATAAACCATTAAAGGCTTGGTGGTGATAATTTATGTTTGTTATATTAACATATGATATAGAAGAAAAGAGAATTAATAGAGTTAGAAAAACGCTAAAAAAATACTTAGTTTGGACTCAAAATTCTGTGTTTGAGGGAGAAATAACAGAAGGAAAGCTACATAAATGTCTTTCTGATGTTAATAAATTAATTGACAAGAAGCTTGATTCAGTATATGTTTATAGAGTAAAAAATTCTAAAAATATAAAAAAGGATGTAGTTAGAATAGAAAAGAGTTTTGATGAATTATTTTTATAATTAGTTTTGCATTAAACCTAATTTTAAATTAATTAAGGTTAAACTATTGAAATTACTAGCTTTCTTGACAATAAAAAATAAATACTAAAAACGCTACTGAAGGTTTACTGCAAAATGTGGAAAATATGATAGATTAAGCATTGCTATAAATACAGTAATGGCGGTGGTTACAGGCTTTTTGAATTTTAGG # Right flank : TGTAGATCCTATAGCATCAATTGGATTTAAGTCAATATAGTAGACACAAAAACACGAATTTTTATGCAGTTTTCTTTAAAGAATCTTCAAGTTGTTGTGGAGTCATGTAACCAATACTGCTGTGAAGTCTTTTTCTGTTATATCAAGATTCTATATACTCAAATATTGCAAATCCGGCGACATCAAAATCATAATATATAGCTAAATTTACTTCTTCCTTCTTTAGCGAAGTGTGAAAGGGTTTAATGTAGGCAGTATCATAAGTGATTTTAATAATGTTAGAACTAGACATTATACTGTGAAAGGGTTTAATGTAGGCAGTATCATAAGGACAATCCTTACCGCTGAAAAAAGTGAATTATATTAATTCCTTTAAATATGTTTAACTGTTATCAAGCTTAATTTAAGAGTTTTGGAAAGATTTATGCTAGACTGCTGTAAAATTAATAAAGGCAGAAAGAAATCTGCCTTGATTTTATCCGTTTCTATAAGTTTGTATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9409-7677 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJSZ01000065.1 Clostridium sporogenes strain PA 3679 isolate NFL VT28_contig065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9408 30 100.0 34 .............................. ACTTATAATTACTTTTGATTTTAAATCTCTATAA 9344 30 100.0 36 .............................. AAGAGTATTTCGAAGAAGTCAAATCCTTTATTTGAT 9278 30 100.0 36 .............................. CAAGATTTGCAGTATCCTATATTTTCTGCTATATAA 9212 30 100.0 36 .............................. GGAGATGTTAAATTCAATGTCTTATCACTAACATGA 9146 30 100.0 36 .............................. GCATTATTTTAATTCTCCTTATTAAATTATTTTGAA 9080 30 100.0 35 .............................. GCTAACATGGTTATAAAGCTTCAAAGTAAATTAAA 9015 30 100.0 36 .............................. TTTCTGTTATATCTTTTTCGTTTTGGCAGGCCTTAT 8949 30 100.0 36 .............................. AATATAACTTTCACATTAGGAAATAAGTTTTTATCT 8883 30 100.0 35 .............................. GTTATTTCATTTAAATTTAACCAGTATTCTATTTG 8818 30 100.0 35 .............................. TAGTTAAAATGTGAATATCTCATATCGCCTACTAT 8753 30 100.0 37 .............................. ACTTTTTCAGTACTTATTTTGTATCACTCCAAACTAA 8686 30 100.0 36 .............................. TTATTGTATTCAAGACGCTTTCGTCGAAAAAACCTT 8620 30 100.0 35 .............................. GGAATCATTTCTATTTGTTTGGGCTTGGCTGGTGT 8555 30 100.0 36 .............................. ATGCATCATCCCCGTGATCATTTTCTTTAACTGGTT 8489 30 100.0 34 .............................. TTATTAGCTTTTTCTGGACTAGGAGGTTCATTAA 8425 30 100.0 34 .............................. GGTATTACAACTTCGTGTGGAATTTCCCACTTTA 8361 30 100.0 34 .............................. TCACTTTCTTGTTTGTATGTCCATTTAACAGTGC 8297 30 100.0 35 .............................. CTTCTTAGCTTGTTTACCTTTGTTTTTCTTAGCTT 8232 30 100.0 36 .............................. TGTTTACGCTTTTGAGGTATTTCTTTTTTAGATCCT 8166 30 100.0 34 .............................. CCAGTTACACAAGCATGGTCCTTATCTTTGACTG 8102 30 100.0 35 .............................. GAAGTATTATCATATGTTGAATTAGCACTTGGTAA 8037 30 100.0 36 .............................. GGTATTCTTCTAACTTCATCTCCTGTAAACAATCTT 7971 30 100.0 36 .............................. ACTACTTTTTGAGAAAGTTTTCTAGTTAAACTTTTA 7905 30 100.0 37 .............................. AGGAGTTGAACTTGTAATTGTTCCTAGCAGATGGTGT 7838 30 100.0 37 .............................. ATTAATTTTAGTATGTTAAGTATTTTATCTGCTAAAG 7771 30 100.0 35 .............................. TGAAGTGCTCCTCTTAACTTTGTAGCCAATACTAT 7706 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.8 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : ATAGGAAGTTATCGTTTGTTTGGAATAAAGTTTACAAGTTGAACATTAACATGAGATGTATTTAAGTAGCGAACTGTGAGTCACTTACTCCTTGGAGGCAACGAGAAGGAGTTTCATTGAGTGATTAGACATTTAGTATTTTAAGTTTAGGCATGATATGAACCCAATAAAATAATAATTTAAGAAATGAAAAGTATGATTTATAAATTTATTAGCTTAAAGCAGCTATTCTTAATGGAATGGATGCTTTTTTTAATTGAGCTTTGTATAAATACAAATAAATCTAATTTTAGTGATTAATCAGTCTGATTATAAGTAAAATGTTTTTCCAACCACATTTAATTTTAAAATATACCTTAACCCTTGAAATATAAGGCTTAAGGTATGCTTTATTAAAATTTTATAAAAAATGACAAACGGTTGGGAAATTTTCTTTAAAACCTTGTAAAATCAATAGTTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : AGAGAGCCCAAATCTACGATTTGGTGTGAATCGCTTACTACTTAGAGAGTGGCATAGGGATTTTTATAAAACTAAACTATGCATTGTGATAACTTCTATATAAATTATTAGATAAAGGGAGATTTTATGAAAAATAAAGTTACTAATAATTTAAATTTTGTTGCAGCAATATTGCTTGGAATTGTGGCTATGTTAAATTTTTTTCAGCATAAAACATTGCTGGGAATTACATATATCTGTTCAGCAATATGTTTTTGTACACTTGAATTTTCAAAAAAGAAAAATGCAAATCATAAATAAATTTAATTTTAAAAACCTGTCTATTTTTAGGACAGGTTTTTAGTATTTAAAGGGGATAGATAAAATAATTTTTGGTAGCTATGTAAATATTGTATATTATTTTATATTTTTGAAGGATTATCCATAACTCTGTAGAAGAATATTTGTGTAAGAAATATATTATAAAAATATGGAGGGAGTATTGTGGATAAATTTCGTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 23456-22152 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJSZ01000065.1 Clostridium sporogenes strain PA 3679 isolate NFL VT28_contig065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================== ================== 23455 30 100.0 35 .............................. GTTTCATAAGCCATGTTTTTACTTGGATTTCTTGC 23390 30 100.0 34 .............................. TTACATAATCTAACAGCACCATTATTCACTTTTA 23326 30 100.0 35 .............................. AGTTTAGCTGGTTTCTATGCTAAAAAAGCAGAAGT 23261 30 100.0 37 .............................. TATATAGGATAAAGGTTATATGTAGATTCAGATACTT 23194 30 100.0 36 .............................. TTTCAACTCCTTTTTCGCCTTTAAAAAAGTCTTTTG 23128 30 100.0 37 .............................. TCTGTAAAAGTATTTAATTCCTTATCCCACATACCAA 23061 30 100.0 34 .............................. TTAAATAACTTATATTTAACGGAACGTAAAAACT 22997 30 100.0 36 .............................. AGAAAAAACAGAGAAGTTAATAAGCCAATTTAAAAA 22931 30 100.0 36 .............................. AATATATCTGCATTTTCTTTGGTCTTACACACATTA 22865 30 100.0 36 .............................. ACTTTATAAACAAGCTGGAAATAGTATTGTAAGTAA 22799 30 100.0 37 .............................. ACAACAGTATTTCCCATAGCTTTTAATTTACTTATTA 22732 30 100.0 36 .............................. GCTAATATTAATATAAATCCTTCATAAGCTTTTTTC 22666 30 100.0 36 .............................. GTTGCTCCATCATTTATAATTACAGCATCATTTATA 22600 30 100.0 35 .............................. CTATTCCACTTTTTTAATTCTGTTATATTACATTC 22535 30 100.0 36 .............................. TCTTTTTACCCTCCAATATTTGTATTGTGATACTAA 22469 30 100.0 37 .............................. TATATACCTCTCACACATACCTGTATATGAGGTACAT 22402 30 100.0 36 .............................. AGATTTAGCCCTAATATGACTAGAACACCAGAAGGT 22336 30 96.7 37 ................G............. ATAGAATAGTACACCAATATTTCGATGATTGGGATAA 22269 30 93.3 58 ......C............G.......... TGTATTAAAAAAGATAAAATATTTAGCAAAAACATGGTGGTATACTTGAAGTGCTAGA 22181 30 73.3 0 ...T.TG.A..TA..C............G. | ========== ====== ====== ====== ============================== ========================================================== ================== 20 30 98.2 37 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : GCTTTGGACAGGTTTGTTTTAGATATTTATTAAAAAACGTAATCACTTAGAAAAATTTTTTTCAAACCTTGTAAAATCAATGGGTGTATGATATTCTCAAAAATAAGAAATGGCTATTTTGCTATGGTTGAACAGTAACATAGGATGTATTTAAATTAACTGAAGCTTCTGTATAGTTTCTTTTCACTACGTTAAACAATAACATGAGATGTATTTAAGCAGGGAACCCAAATCTCTAATTTGTCGTGAGTCGCTTACTCCTTCGAAAATGATATAAGGAGTTTCATTAATGAGCATAATGTATATCTTATATTTAATTAAATTTTTCCAAGTGAATTTAAAATTCAAACCTATTCTAGCCATTGGTATATAAGGCTTAGAATAGGTTTTGGTTATGTGTTTATTAAAAAACGTAATTACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATGGATATATGCTATTCTTAGAACTAAGGAATGGCTATTTTACTATG # Right flank : GAATTATTGATTATAATAAAAAATAAAAATAGGAGTATTTAAATTTTTACATTTGTAGTGTTGCAAAGTACATTGTTTTTATAACATGCATTGAGATTTCTAATATATAATAATTAGGATTTTTAAACGTTAAGATTTATTTAACTAATAAAACCTGTATATTGTTTATTGTAAGTAAAACCGTAACATCAATATGTATTTAAATTTGCAATTATAAAATAAATATATACAGGTTTTCAAAAAAATACAAAAAGGTATTGTAGTATAATCTGATTACTATTATAATTTTATTAAAGAAATAAATAACGTCATTGTAATTATAAAATAATTATAATAAATAATAAGATATTAACTAACAAAAGAAAATAAAAAAGAGGTGATAATAGGAGGGTGAAAAACTATGCTAAGAAATCCAAAACAAGAATTACAACAAGTAGTTAAGTTTGCTAAGAAAGGAGATAAAAAGGCTAAAGAAAATATATTTATGAGATTTAAACCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 16741-17502 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJSZ01000079.1 Clostridium sporogenes strain PA 3679 isolate NFL VT28_contig079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 16741 30 100.0 40 .............................. TGATTTAGATAACCGCTTTTATTTATCCATTCTAGTGAAG 16811 30 100.0 34 .............................. CAAAGTAGACTACCAAAGGTTTGGCTTTCAATAA 16875 30 100.0 36 .............................. TCAAAGACAACCATGTCTGTTGATTCATAATAACAA 16941 30 100.0 37 .............................. TTTGCTTTAGACTGTAGCCTTCTTCTTCTAAGGTATC 17008 30 100.0 37 .............................. TTGTATAACTTTTCTCTTTCTTGTCTTTCTTTTTCCA 17075 30 100.0 37 .............................. GATTGTTGCTCCAGTTGTTTTTGTATTTGCAACCACT 17142 30 100.0 36 .............................. CTAAATTTTATACCCTTAAACACTGTTTCTAATTTA 17208 30 100.0 36 .............................. TTCCTATATAATCATTAGAATTTAATTTTTCTAATA 17274 30 100.0 35 .............................. TGTACATACATTTCATGTGCTTTAGAGTATGGAAC 17339 30 100.0 37 .............................. AATATATTAAAAATAGATGTGCATACAGTTACAGATT 17406 30 100.0 36 .............................. TTGCACGTCCCATAAGGGTACTGATATCAAACTGTT 17472 29 80.0 0 ........A........T..A.-.AA.... | AC [17477] ========== ====== ====== ====== ============================== ======================================== ================== 12 30 98.3 37 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : CATAGGCTGATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTATAGCGTCTTCCTAAAGTAGGCCCCGTTGAGGTTACACCATTTCTAAATTCAACTGAAAGTTTATCAGTATTAAATTTGTTCATTTAATCCCTCCCCATACAATACGTTTTATACAATATTATATGATAGGATTTATGAATTTAGTATATTTATATATAAATCAATTTTAATTATAATATTTAACTTAAATCTTGTACCAGATCTTGTACTACCAATAATATATCAGCTAATAGTACAAATAAAATATTTTCATATTAATTGAATTTTTCCAGGCACAATAAATTTATAAACCTATTCTAGTCATTGATATATAAGGATTGGAATAGGTTCTTATTTTGTATTTATAAAAAAACAAAATCACTTGGAAAACTTTCTACGAAACCTTGTAAAATCAATGGGTTTATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTAATATGATATATAATAAGAATCATTAAAAGTCTTAGAAGAATCTAAGGCTTTTATTTTATGCAAAGTTTTAGAATAGAATATAATTAGTTAATTAAGTTTCTATTAACAAAAACAATAATACTTTTAAAATATAAATAGAATAATTGATTATATTGATTAAAGGGTATATGTTATAATATAGATAAATTTGTATAAAGAGGTATATAAATGGAATTTTGGGAACTGATTGTAACAGTAGATGATAGATCTTGGCTGCAAAATAATGGGGATTTAGATTTATCTACGGGTAGATTAGAAGATAATTTGGAAAGGAAATATAAAAACTTTTTTAATGAAGATATAGATGTAAAGGATAAATTTATAGAGAGCATAGAGTTTAAGAATAGAAAACCAATGCATTACAACTATAAAGGTATAAAATTATTAGCAAATAAGGTAAGTATACAAGTGAAGGATAATGAAGAAGAACAGAAGGTGGCTTTCTTAGCAAGAGCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 21712-22002 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJSZ01000079.1 Clostridium sporogenes strain PA 3679 isolate NFL VT28_contig079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 21712 30 100.0 34 .............................. ATATAAATGAATTTGATTCTAGTCCTGCGTTTAT 21776 30 100.0 36 .............................. TATTATTTCTTTTGATTGTTAGTTTATTCATTTTAT 21842 30 100.0 35 .............................. AGGGTTAATGAAAGTCAATCTAACGAATCATCTGT 21907 30 100.0 36 .............................. GTTATTGCTAAGGTTGGATTAGTTATTTGACTAGGA 21973 30 83.3 0 A.......G..............C....TC | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 96.7 36 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : TAAAGGTTTTGTTTTAAATACAAATGGACAAGAATCAATCATTAATGCTGATAGTGCCGTTGTGGCTATTGGATATTCATCTGAAAAAGACTTATATAATGAGGTTAGATTTGATATTCCAAATGTAAGACTAATTGGAGATGCTAATAAAGTTCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATATACCTTTGCAAAAAACTAGAATGGGTTAATATCCATATCTAGTTTTTTGTTCTTTACTGAAATTCTATAAGTATATGAGTGTTTGTTATGTACTACTTGTGTATATTTAAAATTTTCCAAGTGAATTTAAAATTAAAATCTATTCTAGCTATTGAAACATAAGGCCTAGGATAGGTTTTTGTTATGTGTTTTTGAAAAATCAAAATCACATGGAAAAATTTATATAAAACCTTGTAAAATCAATGTTTATATGATATTCTTAGAAATAAGGAATGGGTATTTTACTATG # Right flank : CAAGAAATGCAATTATTTGATTTGGAATAATCATTTATATATGGGAATAATTTTTTGTTTAGTACTTCTTTGGATTAAGGTATGGGATTTTTATTGACTAAAATATTTTTGAAATTTAGTTTTAAGTTTAGGTTGTATTTTAGAGTGCTGTTGGAATTTTAGCCCCCATTAAAAGAAGTTAAATATTTTTCTTTTAATGGGGGCTATATAAATTGCTAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTCTTTTAAGTTACCGTATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAATTTCAGCGTTTGTTATAAGAGACAATAATATCACCGCATTCTTTTCTAAGAGTTCTTCAACTTTTTTGTCCTTCCAAAATTTGTTATAATTTTCTTCCCCTAAATTTTCATTTGTTTTATAGTTAACGGTTATTTCATATGGCT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //