Array 1 272792-274163 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOXL01000003.1 Escherichia coli strain MOD1-ECOR26 ECOR26_3_length_384293_cov_162.559, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 272792 29 100.0 32 ............................. GTTTGCAAACGCGGTTTGAATCCCGCCGTAAT 272853 29 100.0 32 ............................. CGGATCGTGTGTGTGCCAGCGCTGCGCCCAGG 272914 29 100.0 33 ............................. GGATTTGCGCGTGGTGAACACGGCAACACCTGC 272976 29 100.0 32 ............................. ACCATAACCTGCCCACCCGTTATTTTGTCATC 273037 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 273098 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 273159 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 273220 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 273281 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 273342 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 273403 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 273464 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 273525 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 273586 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 273647 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 273708 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 273769 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 273830 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 273891 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 273952 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 274013 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 274074 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 274135 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 289666-291403 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOXL01000003.1 Escherichia coli strain MOD1-ECOR26 ECOR26_3_length_384293_cov_162.559, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 289666 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 289728 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 289789 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 289850 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 289911 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 289972 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 290033 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 290094 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 290155 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 290216 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 290277 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 290338 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 290399 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 290460 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 290521 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 290582 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 290643 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 290704 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 290765 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 290826 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 290887 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 290948 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 291009 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 291070 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 291131 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 291192 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 291253 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 291314 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 291375 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //