Array 1 1053840-1054974 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134479.1 Rothia aeria strain NCTC10207 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1053840 36 88.9 36 ........CA......TG.................. TGGGGCGATCAGAAGTCCTTGCGCGGCGGAACTTAT 1053912 36 88.9 37 ........CA......TG.................. CACTACATCATGGACGGCGATAAGCAGGTAGGCACAA 1053985 36 88.9 37 ........CA......TG.................. AACACCCGCACCGCCGCCGTCTACACCACATGGGCGC 1054058 36 100.0 39 .................................... ACAGCCACCCGGCAACGGGAGAACGAAAGTGAATCAGAG 1054133 36 100.0 37 .................................... AACACCCGCACCGCCGCCGTCTACACCACATGGGCGC 1054206 36 100.0 39 .................................... ACAGCCACCCGGCAACGGGAGAACGAAAGTGAATCAGAG 1054281 36 100.0 37 .................................... TGCGAACTAGACCTGCAAAAAGTAGGCGTATACGCGT 1054354 36 100.0 36 .................................... GCCAAGGCGCGCTACGGTTATTCTGACATGCTCGGC 1054426 36 97.2 39 ...................................A ACTTAAAGGGTAGGGAGGGAACGGAAACCCCAGACCTGC 1054501 36 88.9 35 ........CA......TG.................. TGGACGCGGGAAGACCGGTCAGAAGACATATCGTC 1054572 36 100.0 38 .................................... TAACAGAGAGGGGGGGCGGCGTATGGGCCGCCTGCAAA 1054646 36 86.1 35 ........CA.....GTG.................. CCAGCGGGGAGCGGATCACCGAAATGCCGCTACTA 1054717 36 88.9 36 ........CA......TG.................. ATGCAGAGGCCAGCCGCCGATACGGGCGGTATCATC 1054789 36 80.6 37 ........CA..T...TG...............AC. AGGTTCAAGGCAGAGCTTGAGGGTTTGCTAAACTTCC 1054862 36 100.0 41 .................................... AAGGTATACATTGACGGCGAATTTAAATTCAGGCGAGAACG 1054939 36 86.1 0 ........CA......TG................A. | ========== ====== ====== ====== ==================================== ========================================= ================== 16 36 93.4 37 GTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGG # Left flank : CGCAGCAGCACCCCGATGAGAAAAACCTCAGAAAAATATTGGCCATGCTCACCAGTGTTTATGCTTGTCAGAGCGTTCTATGGGATAGTTTTCCGGGTTCAGAGACAGAATTTCACGCCCGCCAGGCCCGTGAAGACTTGCAGGGTGCTCAACAGTTCGGTATAGTATTCTTCGTTGCGCGGTTGTAGCTCAGTTGGTAGAGCACCACCTTGCCAAGGTGGATGTCGCGAGTTCAAGTCTCGTCAACCGCTCCACCAAGCCCCCAAAGGTAAAAGCCTTCGGGGGCGTTTTTGTATTGTCGCTTGGTATTGCTGTGAGATCTCGCGAGCACCCGATGCTTACCGTAAATCCCGGGTTTCGCTCGCGGGGATGTATGTGCAGGTCAGGGCCGTTTTTGTGGTCATATTTGTGGATATTGTAGACTGAAGACCAGTGGTTTAACCCTCGCGCTCGCGTAGCCTCTTGAAACCCCAGTATATTCTTGGGATTTTTGAGGGGCG # Right flank : GCGGCTAAAAGTTTTCGGGGCAACCAACTTCATGAGATTGAAGACACGTGACAGTCTGGGACTTATAGGCGAAAAGTACTGTTACTATGAGAAGCGGACGTTGAACATTGGTTTGTATTAGGGCTTCAGCTCAGCCCCAACCATTGTGTAAACGTTTGCTCCCAACATAGGATACGTTGGGAAAATTACCTTCTACCTCTGATATAGGTAGATGCCACAGAAATATCTAGAACAATAAAGTTCTATCGTCCGAAGGGGATAATGATGTCTGCACCTGAGAAAGTTGATATTAAATTTGAGGATCTGAAGAAGGCATGTGCTCCTGGTGGCGCCTCAACTCTAGTCTCGGTAACAGAGCTTAAACCTGCTGCCGGAGAGCACGCATCAGTTGCTCCAGCTAAATTTATTGAGGACTCTAAAAACTCTACTAAGCCGGTTTTCGCTTTTGAAACCCGATATATTGATGGTAAAGCTGCTCGGGTGGTACTCATTGATAGTAA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGG # Alternate repeat : GTCTCACCCATGAGAATGGGTGACTTTCATTGAGGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1062568-1062964 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134479.1 Rothia aeria strain NCTC10207 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1062568 36 100.0 37 .................................... GAGAACGGTATCAAGCCTGTGTGGGAGAATATCCAGC 1062641 36 100.0 36 .................................... CAGCGGCATTAGCAGAGGTCTTAGCCTGCAGGCCCT 1062713 36 100.0 35 .................................... TGGGACAAGGAGTCCCGTATGGCAAATCCTGCCGG 1062784 36 100.0 38 .................................... TACGATCAGCATATGGGGCTGGTTGATTTGGGCATCTC 1062858 36 97.2 35 .............G...................... ATCAAAGCAGTCAACGACCGGTAAAGATCCGCGTA 1062929 36 97.2 0 ..................A................. | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 99.1 36 GTCTCACCCATGAAAATGGGTGACTTTCATTGAGGG # Left flank : TACGATGAGGCGTGACGACACGCGGCGTACTCTTATTGCATATGACATTCCGGATGATAAACGCCGTGGACGGATTGCGAAGCTGCTCTTAACCTGTGGTGACCGGATACAATACAGTGTATTTATCGTTGATATTATTCCTTCAAAGCTCCTTAGGCTAAAGGATGAAATCGGGCAGCAGGTAGAGACCAGCGAAGATTCAGTACTGTTTTGTGATCTTGGTAGGCTCTCAGAACTTGGCGAAAAGCGTTTTAGCTATGTGGGGCAGTCGCGGGACACCACAGATAATGACGTGCTTATCCTCTAATATATGTATTATGGGCGCGAGCACCTGGTGCTTACCGAAAACTCCGGGTTTCGCTCGCGTGAGTGAAACACCTTGTCAGAGTCGTTTTGTGTCTGAATGATTGCCTCCGATAGACTGAATAACATGAGCGGTTGTCCCTACGCTCGCGTAGCCCCTTGAGATGCCAGTATATTACTGGGGTTTTTGAGGGGCG # Right flank : GTCCGTCGTAGCGTCCCACTCCTTGCCACTGATTTTATTAAAATATTTTGCAGATTCCGCCCTCAGCATGTGCTGTGCACCTGCGGGGAGGGGGGTCTATACTCTACAGTTAATAGAGAAGGCTCCTGATCGTTCCCTGCACCCGTAGGGTCTGCTAGAAAACGGCTTGCCTACCCGAAATTTTTTGGGTGGGTTGGCCGCTTTCTTTTATTTAATTTTCTTTTGCTGTGTTTTCTAACCGTCAGCTTCGCGTCTACTGTTTTTTCATGGGCTGCGGTGATAAAAGTAATTTTTTGTGTATTTTCGGTATTCGGTTTGTAAAACCCTGGGAGTTCGCTAAAAATTATGGGTAGAGCATTATTGAGGATGCTTTTGGATGCGTGCCCTGTTTCTTCCGGTTAAGAGTGGTCTTCCCGGTGGTGCGCGGCGCGTTTTTTGTTTCGAAAGGAAACCAATGAACCTGACTCTCGCTTCCGGCAAGGTTACAAAGTCTTTCGTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCATGAAAATGGGTGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //