Array 1 373526-373718 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYN01000042.1 Cylindrospermopsis raciborskii CENA303 NODE_20_length_403228_cov_337.224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 373526 37 100.0 42 ..................................... TTGTACAAGTTACTAGTCCTGATTGTTTGGTTCAAGAATTTA 373605 37 100.0 39 ..................................... TGGCGTTTTTAAAAACCCCAAAAGGGGAATTTTTTAAGA 373681 37 83.8 0 ....................A.....A.AT...TT.. | T [373716] ========== ====== ====== ====== ===================================== ========================================== ================== 3 37 94.6 40 GTTCCAATTTCTCTTTATCTCCATAGGAGATTGAAAC # Left flank : TAATTTAACAGGTGGAATTGCGGAGTTTTCTGGAGACCAAACAGCAATAGCAGAGAATTTGAAATTATTTCTGAATGCTTTGTTAGGAGAATACCAAATTAGCTATATCCAACCTAATGCAGAGCGAGGAACTTTACATAAGGTCGAGGTACAAGTTAAGGATGGAAATAAGAAGGTTAACTCAAAGTCCGTGCCATATATTATGCCCGTATTCGGGCGATCGCTCCCTTTGGCAAATCGTTTGGTTATGGTAACATCAATATTATTTATTCTTATAGTTGGTGGGATATTTCCTTTTCGTTGGTGGGGGGAACATCTCAAGGGACAAGCACAGGGAGAGTAAGCAGATTTTTCCTAGGTTACGTACGGAATTAAGGTTCCATCGTAAGTTAGCCAAGGGAGGTCTTAAACCTGACGGAAGTGATATACTAGTTGTTGGATCGGTTTGCCTCGCAAGGCTATGCTTTGTGCCAGTCACTGCAAGGTCTTCAGCGATCGGG # Right flank : CGAACGAGAATTTTATGGTGGTTTCCTCAAGAGTGATTCCCGGTCTATGGTAGGATTGAAAAGTATGAAAAACAAAAAGTAAAAAAATGAAACTAAAAATTTGGCATTACTACATTGAACATTGAAGAACAGGGAGAAAAAGAAGGTCGTCCGGTCATGGAAAAAATTAACTTAACTCTCATACCGGCGAATTTAAGGGCTTGGGAAGGGGAAAACAAAGCACTTGCATTATTACCAGATATTCAAAAATTAGTATCAGAAAATGATCAACATCGTTGTTTATATGTTATGGATTCTGTGGGAACAGCCAGGAAATTAAAGCAAGCACTAAGTCAAATGTTCGGTGGTGAAAATTTGGGAGAAGCACACGGAATAGTACAAGCATCGGAAAAAAAGGATGCCTTAAAAAAAGTTCATACAACAGGAACAAGTGGCATAGAAGTAGGAATAGATTTTACAGATGAATATTTTAAAGATCTACTATTATTTGAAGGAAGAAC # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTTCTCTTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 145035-146290 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYN01000058.1 Cylindrospermopsis raciborskii CENA303 NODE_352_length_146406_cov_386.443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 145035 36 100.0 48 .................................... CCATGCCAGAGGCTCTGGCTCGAGGTGGGTGCATACCCATCCTTGAGT 145119 36 100.0 40 .................................... TTGATGTTGCAAGGCAAGTGCTTTCCTTTTGCCTTGGGCG 145195 36 100.0 37 .................................... CGCTAAATCATCAACAGCAAGAGGAATTGAATTTAAA 145268 36 100.0 39 .................................... TTCTTTGAATGGATTTAAATTTATGGATTTATATCCACA 145343 36 100.0 36 .................................... TTGGAATATTACTCGTCCTATCCCATACGATAAAAA 145415 36 100.0 36 .................................... AAGATAGAGTATTTTGATTTAACGCATGATGACCAC 145487 36 100.0 40 .................................... AAATTTAAAGTTTCAACTCCAGGGAAGAACCTTGGAGGAA 145563 36 100.0 50 .................................... ATTACACCCAGTATCATTTCAGTGTGAGTTTTACTCCAGAAGGTTTAGAA 145649 36 100.0 42 .................................... CTATTATAAGAAATTCGTCTCAAAAAGTCTCTACACTGCTAT 145727 36 100.0 40 .................................... TGTACTCCCCCCCCACTACAAGTCTGGATTACGTCCGACT 145803 36 100.0 42 .................................... CATTATTCATCTCCTAGTTGTTTATTAATAAACTACCATAAA 145881 36 100.0 40 .................................... AGCAGTACTGCTGGAAAGAGTACCATTCATTATCTTGATG 145957 36 100.0 38 .................................... ACATTAGATTTAAGCAACCAAGAAACTCAAGTTGATAC 146031 36 100.0 37 .................................... AAGAGTACTTTGTTGGTCTTAGCCGCCAACTTCTGAA 146104 36 100.0 35 .................................... TACCATGCCCGCGCGGGCCAGCGCATGGTATTCGT 146175 36 100.0 44 .................................... TATTCCAAAATGGAATTTATGCCTATTAGCAAAGTATGGCTCGT 146255 36 83.3 0 ............................CA.CT.TT | ========== ====== ====== ====== ==================================== ================================================== ================== 17 36 99.0 40 GTCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Left flank : TCTAGTTCCATATCGTACCCTAAGTGCCAGAAGTGCATAAGACTGATGAACCATACTGAAAAAGTATAAGCTATTGTTTATAATAGGTGAAGGTAATTTTTCGGAGATGCTAGAGGGCGTTGGGCATGAGGGTAAGTTGAGTGCGATCGCACAAATTATTAAGTTTGTGCTTTTTATTACTGTTATGATTTATCATTGGGTTAATAGATAAAGCAGCGGCATAAAATACTTTTAGAATAATTTATTGATAAATTTTATAGTTAAACTAATGATAAAATGAGAAATAAATATGACAATAAAATCAGTGAATAACGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATCGTCGGGAACCTCGGTGCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAGACGGGGTAAGGGATTAAAATGGAGGG # Right flank : TTCATGTATTTAAACTACGAAATGAGGTAAACTATAATAAGAGTGATAAACTAAAATAGACTAAAAACATTGTTAAATTATATGCCAAAACCTTATTCAGTAGATTTGCGTAATCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 562-1215 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYN01000049.1 Cylindrospermopsis raciborskii CENA303 NODE_264_length_30208_cov_305.894, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 562 36 100.0 47 .................................... GAACCGTGCATGGTTTCCACCCACATGCCGAATATGCTTTATTGCAT 645 36 100.0 38 .................................... TAAACAAATCTATGCAGATAGATTGTTAAACAATAAAG 719 36 100.0 43 .................................... CCTGGTAGAGGAATGAGAACGGTACAGACTTTAATCAATTTAA 798 36 100.0 37 .................................... AAATAAATATATAAACAGCAAATAAGAAAATTCTTTT 871 36 100.0 46 .................................... AACTCGATACGTTTCTTAACAACAGACACCGGAGGGCTTTTATACC 953 36 100.0 38 .................................... TAAAGCCGCTAATAAAATGCACGAAATACACGAATTTA 1027 36 100.0 39 .................................... TCTATGAGGTATTTCTAGGGGGCTATAGCCCAACTTCAT 1102 36 100.0 42 .................................... AGGTAAGGGAGCCGGGGAGGAGGTAGTTAGAGCTAGAGTCAT 1180 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 9 36 100.0 42 GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Left flank : TTCCAAGTCAAAAGAGATGCTATGCTTTTCAATTAAACTACTAATTTATTACCTAAGAGAAAAAAGTTTTTCTGCAATAAGTTGGGGGTGACTATCAGGGTTTTATTAATAATGCAATCTCGCGAGTGCTTCGCAATCGTCCTACAAGAGAAATTTTTCAAATTAGGAGAAAATCTTAAATCATCCCGCAAATATGCAACGCCTCATAGGAAGGTAATTTTTCTAGTTTTTTCAAGGCCTCTGCCTCGGCCCGTGCAGAGGCCGCCGCAAACCTTTGATCTAACTTCTTTTCCATTTCTTTGTTGGCCCTTTCCTGTTCCCGGATTTGGTGCTTTAGAGTAATTAAATACTCTTTTTTCTCTTCAAAGTGAGTTTCCATTAATTCGACTTCCTAGAAGAAAGCGGACGGGAGACTGTTTTTAAATAAAAGTTATGAGTCAAATGTGGTGATTGAGGCTCTAACAGCAGAGACAAAGATAGTCACATTATCAACAACAACA # Right flank : CCCCTCCATTTTAATCCCTTACCCTGTCTACTGTCTAGACCCACTTTCCGAAGGTCAGAAAAAAAATCCCATTCCAGCCTCTTATACACTCTTAAAACATACCTCAAATCCTTATGGGACAAGGGACCGAGGTTCCCGACGATTTTATTAGCCTTCCAGCCATTTTCCTTGACCTTCGGAATTTTTTCGTTATTCACTGATTTTATTGTCATATTTATTTCTCTTCCTATTATTACATTAATTATAACAATTTTCAATATTTTATCCCAAATATCTTGTTATAACTACACTCTCTCCATTTTTCCAATAATAAATTATAAAAGTGATAAAAAACACAGTCACGATTTTTGGTGTGTTTGCGAATCACTCCCAGCGCGTTTACGAATCACTCCCTACGTGCGTTTGTAAAGCACTCCCTACGTGCGATCGCACCCAATGACCTTGATAAATTTCCCTTGAGAAGGGGGAGGTCATGGGAATATCCAGCGCATTTGCGAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 5716-6599 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYN01000049.1 Cylindrospermopsis raciborskii CENA303 NODE_264_length_30208_cov_305.894, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 5716 36 100.0 35 .................................... TTTTTAAAGTAAGATGGGTAATTGTTATCCCTGGT 5787 36 100.0 50 .................................... GGACTGCAGATTTCAAAGGCATTGACGACTTGATTGTTGGCGACTTGGAA 5873 36 100.0 44 .................................... ACGGGAGTCGTTAAATTAACTTACGATTTCCGCACATCATATTT 5953 36 100.0 40 .................................... ATTCTACTTTAGGAGTTGCTTGTGGCACAAATATTAAGCG 6029 36 100.0 36 .................................... ATAAGATTCATGATCTCCCAAACTAGTGAAAATAGC 6101 36 100.0 37 .................................... TACAGCAAATACCACCACTTCCCATCCACCTCCCAAG 6174 36 100.0 41 .................................... TGGGAAGACTCTCAAGAGGAAATGGGAAAACATGCTGTTGC 6251 36 100.0 47 .................................... ATTAAAAGAAACCCAGACAAGGAGAGATTCTGGATAGGGGATGATTA 6334 36 100.0 40 .................................... CCAAAGAAAGAAGAGAAAACCTTCGCCAGGGCGTAAAAGC 6410 36 100.0 46 .................................... GTACTTTATTTAGCAAGCCTGGAGTTCTATTTGACGACATGTTCTT 6492 36 100.0 36 .................................... AAAAAACTTGACGAGGGAGTATTCCCTATAGGATTT 6564 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 12 36 100.0 41 GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Left flank : AAGACAAAAGCTGCTGCTGCAATTCCTTGTGTACAGACAGTAATTGAAAATTTAAGTAAGAATTTACATGTAACAGAGATATTGCTTGGTATAAAAGCGGAAACAAGTCCAATAGTCGCAATTAAAAAGATATTAGAGCTTATAGGAGTAAAATTAAGAAGACAAGGAAGAGAAGCAAAAGGTCAAAGACTATGGGTATACAAGGTAGAGAAGAACCCGTTGTTTGAAACCATAAAAAGTACCAATGGTAGGAGTTGCCGTGGTTTGGAACTGTATGAAAGGGGTTTGGGAAGAGGCAATAATTAAGACAGTTGAGGTATTGGTAAACGGTACTTTAACAACAATCTACCAGATTAGAAAGATTTATTAACGTTTCCATTAATTCGACTTCCTAGAAGAAAGCGGACGGGAGACTGTTTTTAAATAAAAGTTATGAGTCAAATGTGGTGATTGAGGCTCTAACAGCAGAGACAAAGATAGTCACATTATCAACAACAACA # Right flank : CCCCTCCATTTTAATCCCTTACCCTGTCTACTGTCTAGACCCACTTTCCGAAGGTCAGAAAAAAAATCCCATTCCAGCCTCTTATACACTCTTAAAACATACCTCAAATCCTTATGGGACAAGGGACCGAGGTTCCCGACGATTTTACTAGCCTTCCAGCCATTTTCCTTGACCTTCGGAATTTTTTCGTCATTCACTGATTTTATTGTCATATTTATTTCTCTTCCTATTATTACATTAATTATAAGAATTTTCAATATTTTATTCCAAATATCTTGTTATAACTATACTCCCTCCATTTTTCCAATAATAAATTATAAAGGTGATAAAAAACACAGTCACGATTTTTGGTGTGTTTGTGAATCACTCCCAGCGCGTTTACGAATCACTCCCTACGTGCGTTTGCGAAGCACTCGCTATGCGCGATCGCACATTTACCATGTTTATAAATTTTCCTTGAGAACAGAAGGACAGGAATTACTAAGTGCGATCGCACCCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 8738-8055 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYN01000049.1 Cylindrospermopsis raciborskii CENA303 NODE_264_length_30208_cov_305.894, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 8737 36 100.0 36 .................................... ACTTGTGTAAAGTTGTCAAAGAAGTATGTTCTTAAC 8665 36 100.0 34 .................................... ACCTCTCTGCTGACGGTCTCACCGTCATGTGAGA 8595 36 100.0 40 .................................... AATAGAGACTTTAGCCGAAGAAAATGAAGAAATTCTTCGG 8519 36 100.0 39 .................................... GGCCTCGTGTGCGAGTATTTTTACACTGCGTTCTTTAAC 8444 36 100.0 35 .................................... GAAAAAGAATTTGAAACAAAAAAGTAGTTAAACAT 8373 36 100.0 34 .................................... AACCAGGTCCCAGCCGGGGCTGTTTTCCAAGCCT 8303 36 100.0 35 .................................... ATCTACTACCTCTACTACTAGATCCTGTATAGAGG 8232 36 100.0 34 .................................... GGTTAAACTCTAGGGGGTTCATCCCAATTAAAGA 8162 36 97.2 36 .........G.......................... TTGGTAGCGAACGATGTAAGTTTTCATAGTTTATTT 8090 36 83.3 0 ....A.....A.T.................CA...T | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 98.0 36 GTCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Left flank : GTTAGGAGCGATTTCAGTTAGCATCCCATGACCTCCGCTTTCTCAAGGGAAATTTATCAAGGTCATTGGGTGCGATCGCGCGTAGCGAGTGCTTTACAAACGCACGTAGGGAGCGATTCGTAAACGCGCTGGGAGTGATTCACAAACAGACCAAAAATCGTGACTGTGTTTTTTATCACCTTTATAATTTATTATTGGAAAAATGGAGAGAGTGTAGTTATAACAAGATATTTGGGATAAAATATTGAAAATTCTTATAATTAATGTAATAATAGGAAGAGAAATAAATATGACAATAATATCAGTGAATAGCGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAAACAGGGTAAGGGTTTAAAATGGAAGG # Right flank : CCTTGATCAAGGTTTTTAAAAACCTGGAAAAATTAAGGATGATAAACATGCGATCTCCCATAGCGAGTGCTTTGGAACCGCGCTGGATTAACTGCCATGCGATCGCAACCGATGTCCCAAAACCACAAGTAAAAAACTGACTTTTTTTCTGGAGGTTTTAAGTAAATACATCCATAATAAGGTTTAAGCTCTTTGGATCCCCCCAACCCCCCTTAAAAAAGGGGGCTAATTGTTTTGTGTTTAGTTTATGAGGAGTTAGGGCTGCTTATATTATAATAGATGGGGTAAGTGCTAGGGAAATTATGAATGGGTAAAGGGCGATCGCGCTGGGAGTGCTTGGCAAATGCTCTGGGGTAACTGCCATGCGATCGCAACCGATGTCCCAAAACCACAAGTACAAAACTGACTTTTTTTCTGGAGGTTTTAAGTAAATACATCCATAATAAGGTTTAAGCTCTTTGGATCCCCCCAACCCCCCTTAAAAAAGGGGGCTAATTGTT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 13274-12190 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYN01000049.1 Cylindrospermopsis raciborskii CENA303 NODE_264_length_30208_cov_305.894, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 13273 36 100.0 35 .................................... TGTTGAATACTCTGAAACCATTTCTATAAATGATG 13202 36 100.0 38 .................................... TGATTAAATATAGTCGCGCCTTTAAACATTGATCCCAT 13128 36 100.0 50 .................................... CAGAAAACTGATACCCATCGGGGATCATACGCATTACATCCTTAACATAT 13042 36 100.0 44 .................................... CCGAACCCTATGACGGGTTTCAACCGTCTTGGGTTTTTGATAAG 12962 36 100.0 35 .................................... CCCCAACGGGTGGCGTTTTCTCTTACGTCCTTCGC 12891 36 100.0 38 .................................... AGAAGTTTCAGAATATTTGGCTGATCTCGTATTTAAAC 12817 36 100.0 34 .................................... AGGATAATTTTTGATTTTGGTTTTTTCATTTCTC 12747 36 100.0 44 .................................... CCCCGGAAACGTTTGATGGTGGACTGTACCAACTGCCTATTCGA 12667 36 100.0 36 .................................... AAGAAACAGAGAGTATGCACCCATGCCTGAGGCTCA 12595 36 100.0 42 .................................... GAACGCAATGGTGTCATAGACTAGGTTGCGTCCAGGAAACTC 12517 36 100.0 40 .................................... TCTTTGAGTTCGTTTGTGTCTACAATACCAATTAAGTAAA 12441 36 100.0 34 .................................... ACGTACAGGCCGCCATCTCCCCGTACGTAATAGG 12371 36 100.0 38 .................................... ACTGTTCTTCTCAGACATGTCTTTTAGCCTGGGGTTTT 12297 36 100.0 36 .................................... TTGGTAGCGAACGATGTAAGTTTTCATAGTTTATTT 12225 36 83.3 0 ....A.....A.T.................CA...A | ========== ====== ====== ====== ==================================== ================================================== ================== 15 36 98.9 39 GTCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Left flank : TTATGAAAAGTTGGAGCTGCTTATATTATAATGGATGGGGTAAGTGGTGGGGAATTTATGAAGGGGGTAAAGGGCGATCTCGCGTAGCGAGTGCTTTGCAAACGCGCTGGGAGTACTTTGCAAATGCACTGGGAGTGATTCACAAACACACCAAAAATCGTGCCTGTGTTTTTTATCACTTTTATAATTTATTATTGGAAAAATGGAGAGAGTATAGTTATAACAAGATATTTGGGATAAAATATTGAAAATTCTTATAATTAATGTAATAATAGGAAGAGAAATAAATATGACAATAATATCAGTGAATAACGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAAACAGGGTAAGGGTTTAAAATGGTATT # Right flank : CCTTGATCAAGGTTTTTAAAAACCTGGAAAAATTAAGGATGATAAACATGCGATCGCGCAAGTGCGAGTGCTTCGCAAACGCATGTAGTGAGTGCTTGGCAAATGCACTGGATTAACTGCCATGCGATCGGAACCGATGTTCCAAAACCACAAGTAAAAAACTGACTTTTGTTCTGGAGATCTTAAGTAAATACACCCCCTAAGAAGGTTTAAATTCTTTCGATCCCCCCCAACCCCCCCTTAAAAAAGGGGGGCTAATTGTTTTGTGTTTAGTTTATGAGAAGTTAGAGCTGCTTATATTATAATAGATGGGGTAAGTGCTAGGGAAATTATGAAGGGGGTAAAGGGCGATCGCGCATAGCGAGTACTTCGCAAACGCGCTGGATTAACTGCCATGCGATCGGAATCCAACCCAAACTTAGGCGTTGCACCTGCACGGGTATAATAAGGAGAAGAATTGCCAAGATATGCCTAGATATTTTTATTTAGCTACGATCCCT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 28127-29147 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYN01000049.1 Cylindrospermopsis raciborskii CENA303 NODE_264_length_30208_cov_305.894, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 28127 36 100.0 43 .................................... TGTAACACCCTCTGTAACCTCTGATAAGTCCGTGTTAACTCTT 28206 36 100.0 36 .................................... TTCCGCTGGAAATAAGTCCGGTGGCTTTGACTACTA 28278 36 100.0 41 .................................... TGCCCTGGTAAATTAGTTGTTCCTTTTCCTGCTGTAGGATG 28355 36 100.0 40 .................................... CTCTGGATTACGAAGTAAGTGGGGAACAACTTGCTTTGCT 28431 36 100.0 49 .................................... TCGCGGCTGTGGACCACTCTAAGTCCGTCAGCTGGAAGAGGGGAAGTAG 28516 36 100.0 39 .................................... CCGCTTTAAGTGGCTTTCCCATCTTGCCTATTTGTCGGT 28591 36 100.0 36 .................................... AAACAGCATCAATCCAACGCAATAATCAATGTTCTA 28663 36 100.0 42 .................................... TTGTACTGAACAATTTTAGCTGCATAAGCAAGTAATTGATAA 28741 36 100.0 52 .................................... TGCAAAGCCACCCCTTGGCCGTCTCCTCGACTGTTTCAAATGTGAAAATAAC 28829 36 100.0 31 .................................... ACGATGGTTGTGAACTGAAATATAATCTCCT Deletion [28896] 28896 36 100.0 39 .................................... ACTAAAGGTTCATACACATAATATGTAACCTTAAAAAAC 28971 36 100.0 34 .................................... ATTACAGTGTTTACTAAGGGATTTCAATAAAGAA 29041 36 100.0 35 .................................... ATTCCCAGGAGGAAACGCCTGGGGCAAGGCGGTAA 29112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 14 36 100.0 40 GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Left flank : TGCATTTTTCTGGGTTTTCTCACCGATTAGTAGCACTGCGCTTTATGGAAGTTAAGGACTACATCGGGACCAGGGCGTTTTCATTCTCCAAATAATTTAGTAGGTCGCGTTCAAGTGAGTTACTATCAGACTCCACGGTAAAGTTATCTAAGTTATTACGCAGCAATTCTAATTGTTCTTCAGTCAATCCCGGAATTTTTAAAATATCTTCTACTTTTCTATAAGGCGAATGAGTAATTACCAAACGAGCAAGTACGGGATAAAGTCCAGGATATTGACGAAATGCACGTGTATTTGTTGGATTATTAATATCTATTTTTTGTCCAAACTCCGTACTAAGCTTGGCATCAACCATATTGAACTTCATTGGGTGGTAAAAAGTCCAATTGTCAGCTAGTGCTGTTTGGGAAAATGCTATTCCTGAAATTAGGAACATAGCAGTTACGGACATCAATAAACATTTTAGAAGTTTCATACCTGATTTTATGTTTGTGAGTTTA # Right flank : CCCCTCCATTTTAAACCCTTACCCTGTCTACTGTCTAGAACCACTTTCCGAAGGTCAGAAAAAAAATCCCATTCCAGCCTCTTATACACTCTTAAAACATACCTCAAATCCTTATGGGACAAGGGACCGAGGTTCCCGACGATTTTACTAGCCTTCCAGCCATTTTCCTTGACCTTCGGAATTTTTTCGCTATTCACTGATATTATTGTCATATTTATTTCTCTTCCTATTATTACATTAACTACAATATTTTTCAATATTTTATCCCAAATATCTTGTTATAACTATACTCTTTCTATTTTTAGAATAATAAATTATAAAGGTGATAAAAAACACAGTCACGATTTTTGGTGTGTTTGCGAATCACTCCCTACGTTTGTTTGTAAAGTACTCGCTACGTGCGATCGCTCCTAACCATGTTCACAAATTTCCCTTGAGAACGGAGAGGTAAGGGAATATCCAGCACATTAAGGAAGTACTCGCTACGCGAGATCGCTTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 2522-1224 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYN01000017.1 Cylindrospermopsis raciborskii CENA303 NODE_497_length_19828_cov_307.384, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 2521 36 100.0 36 .................................... TAAAGAAAAAAGAACAGGAAATGATAAACAGTAAAA 2449 36 100.0 36 .................................... AAAATAGGATGGATATTGATTATCCGGGTTAATAAT 2377 36 100.0 48 .................................... TTGGGCTACTGCGGTTGCCTGGCCGAGAAAAATTGAAATTTCCAGGAG 2293 36 100.0 37 .................................... ACTCATACTACCAACAAGTCCTGAATATTCTCCTATT 2220 36 100.0 39 .................................... CGTAACCGCTACCTAATCCAAAGATTTGGTTAAAAGTAC 2145 36 100.0 38 .................................... TTAGATACAGCTAATTTTGTGTTCTTAGCTGTTAATTT 2071 36 100.0 36 .................................... TCTACGAGGGAGAAAGTAAGGAGTATTATTTCTTCG 1999 36 100.0 34 .................................... AACCCCAAGCCCGACTTTGCAAATTGGGTTTGGG 1929 36 100.0 38 .................................... AATCTTTACTGGTGCAACGGCTGCACTCACTATCCCCT 1855 36 100.0 39 .................................... GTCACGTTTTGTCCTGTAGTTAACAGTTTGCGTGACACT 1780 36 100.0 36 .................................... AATTAGATAAGATTATTAACAAGAAGTTAATGTACA 1708 36 100.0 42 .................................... AGGAAATCCGCGAATTGAACGCGGACCTAAAAGAGCTTATAG 1630 36 100.0 35 .................................... ACATTCCCAAAATTACAATTTGAGAAATCAAAAAA 1559 36 100.0 38 .................................... CTACCCCAATTTCACCTTACCCCCAACTCCAATTCACC 1485 36 100.0 47 .................................... GAGCCAGAGCCTCTGGCTTGGGTGCATACCAAGAAATTCCTAAGGGA 1402 36 100.0 37 .................................... GCAATTAGCCCATATAGGCCGTCGCCAGGGGCCGATT 1329 36 100.0 34 .................................... GGGATTAGAAAAGAAAACATAAAGTCACCAAAAA 1259 36 91.7 0 ..............................CA...A | ========== ====== ====== ====== ==================================== ================================================ ================== 18 36 99.5 38 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : CCAGTGCGATCGCCTGTAGCAAGTACTTCGTAAACGAACTCAGCATCCCCTAGCCCCTCCGTTCTCAAGGAAAATTTATCAAGGTCATTGGGTGCGATCGCCCGTAGGGAGTGCTTTACAAACGCACGTAGGAAGTGATTTGCAAACAGACCAAAAATCGTGACTGTGTTTTTTATCACCTTTATAATTTATTATTGGAAAAATGGAGAAAGTATAGTTATAACAAGATATTTGGGATAAAATATTGAAAATTCTTATAATTAATGTAATAATAGGGAGAGAAATAAATATGACAATAAAATCAGTGAATGACGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAGACAGGGTAAGGGATTAAAATGGAGGG # Right flank : CCTTCCCCAAGGTTTTTAAAAACCTGAAAAATCTAAGGATGATAAAGATGCGATCGCGCATAGCGAGTGCTTCGCAAACGCCCGTAGTGAGTACTTCGTAAACCCGCTGGATATTCCTTGACCTCCCCATTCTCAAGGGAAATTTGTGAACATGATAAATGAGCGATTTCAGTTAGCATCCCATGACCTCTCCATTCTCAAGGGAAAAATTGAGGGCGGTTAAAAAGGCGATCGCAATTTTGGACAATGAAAATGTGTGGAGGTGCGATCGCACTTAGGGTTTAATCTTCTCAAGGAAATGGGGGCGATCGCACTTTCCCTAATCTTCTCAAGGGAAATTTTGAGGGCGGTTAAAAAGGCGATCGCAATTCTGGAGAATGAAAATGTGGGGAGGTGCGATCGCGCGTAGCGAGTACTTTACAAAGGCATTTACTTGTTTGCCGACCGTTCGTTATCAAGCGAAATTGTGAGGATGGTGGGAAGGTGTGAACACTTATTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1479-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYN01000053.1 Cylindrospermopsis raciborskii CENA303 NODE_6496_length_2539_cov_449.037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1478 36 100.0 34 .................................... GCTGTACATGAAAAATCTATATAAATTCAGTAGT 1408 36 100.0 35 .................................... ATCCTTCGCGCTGGGCTACATTTTCTTCTCGTACT 1337 36 100.0 47 .................................... CTCGGATTATTTTCCGAGCTACCGAAGCTATCTCTAAAGTCACTGGA 1254 36 100.0 41 .................................... TAAAATGCCCAAGTATGCTGGGCAGTTGTTAGCATTGTCCG 1177 36 100.0 40 .................................... TTGGCGTTCAAGTGATAGCTGTGGTAACTGACACAGACTT 1101 36 100.0 39 .................................... CCCCATGCCAGAGGCTCGGGCTCGATGTGAATGCAGTTC 1026 36 100.0 36 .................................... CTATAGTCTTGGGTAGTAAACCTAAAGCTTTATTTT 954 36 100.0 39 .................................... TTTTAGTTCTTGGGTATACTTCTCATTGATCATCCTTTG 879 36 100.0 35 .................................... CCTCCCATTGGGGAAGCTGCAGTAGCCCCTCTCAC 808 36 100.0 36 .................................... AATTCTTCCCTTATTAGGGCCTCCAGTTGAGGTCTA 736 36 100.0 37 .................................... TTTGTACTCTAGGTTTAGTAAAGCTATCCCAAATTTA 663 36 100.0 43 .................................... TCCATCTTGCATTGAGCTATGTACTGCTCCTCAGCCTCATCCT 584 36 100.0 35 .................................... GTAGGTCAGCAAAGCTAAGGTCAGACATATTAAGG 513 36 100.0 41 .................................... ATGTATATAGACAGAAAGGTAGGCTGTATCCATACACTGTA 436 36 100.0 36 .................................... TTTCTCTGTTTTAGTTAACTTAATCATGGTCTACCT 364 36 91.7 0 ..............................CA...A | ========== ====== ====== ====== ==================================== =============================================== ================== 16 36 99.5 38 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : AATAAGCGATCTCGCGTAGCGAGTACTTCCTTAATGTGCTGGATATTCCCTTACCTCTCCGTTCTCAAGGGAAATTTGTGAACATGGTTAGGAGCGATCGCACGTAGCGAGTACTTTACAAACAAACGTAGGGAGTGATTCGCAAACACACCAAAAATCGTGACTGTGTTTTTTATCACCTTTATAATTTATTATTCTAAAAATAGAAAGAGTATAGTTATAACAAGATATTTGGGATAAAATATTGAAAAATATTGTAGTTAATGTAATAATAGGAAGAGAAATAAATATGACAATAATATCAGTGAATAGCGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGTTCTAGACAGTAGACAGGGTAAGGGTTTAAAATGGAGGG # Right flank : ACCTTCCCTAAGGTTTTTAAAAACCTGAAAAATCTAAGGATGATAAACATGCGATCGCCATGCCCACATCCATAGCTGAACTATTGCAGCAGTGATTCTTGAGGAGTGAGTTTTTAAAAAGGGCGATCGCACAGTACTCCCTACGCGCGATCGCCCGTCCTGTTCCCTACTTCCCAGCTCAAAATTATAATACAAAGGAAACATTAGCTGCTTACTTACTCTCTCTTGACATCAACCCAGATGAGATTTAAATCACTAGTCCAATATCATTGCTCCTGATTTTTTATTTGGTTGACACCCAGTTGAGAAAGAATAATTGCCAAGTGCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1862-989 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYN01000015.1 Cylindrospermopsis raciborskii CENA303 NODE_73_length_112493_cov_480.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 1861 36 100.0 41 .................................... CAGGCTAAAGTCTCTATTTCATCCCTTCTTAGGGAAATAGA 1784 36 100.0 34 .................................... AGTAAAATACTCATCTTTTTAACTCCAAAAAACT 1714 36 100.0 45 .................................... CAGAAGGCTGTGGGGTAGCAGTAGCTTTAACCGACGGATCCACAG 1633 36 100.0 34 .................................... TGTTTGTAGAGAGTTTCAGCTTTATTATAGTTAT 1563 36 100.0 36 .................................... TCCTCATTGAGGACAATCTTCTTGCCTCCAAGGGGA 1491 36 100.0 40 .................................... CACTATTAAAAAACTTGAATTCTTTTTTTTGTATCGAGAA 1415 36 100.0 43 .................................... ATCGTCTTCTGAAAGTAAATTTTATGAGTAGTATTCCGATAAA 1336 36 100.0 38 .................................... AAAGTTAAGATTTTGATTTTTAATGGTTGCATTTTTGA 1262 36 100.0 41 .................................... CTTGACAGATTAGCATATTGCAAATCAGCACCTGAGAGATT 1185 36 100.0 55 .................................... TTTGTACTCCCAGGTTGGGATCCACACGAGCAACGCTAACGTAGCGTCGTCCTTC 1094 36 100.0 34 .................................... TTCATCCCATTGATAGTCAGGTTCATTATTCCAA 1024 36 91.7 0 ..............................CA...A | ========== ====== ====== ====== ==================================== ======================================================= ================== 12 36 99.3 40 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TTAGTTGAGGTTTATTTGAAAGGGGTTGGTATTGTTAAGTATAAGGTTTATTGGTGGTTTGTGGGTAGGTTTAAAAATGATGGTGGACTAAAGGGAATCATAAGTGGGAGTGTGGTGCGATTTCGCAAGTGCGAGTGCTTCGCGATCGCACTAAAAATGGAGACTGTGTTTTTTATTACTTTTATAAAGTATTGTTAAAAGAATGGAGAGAATAAGGGTGTAACAACACATTTGGGATAAAATATTGAAAAATATTGTAGTGAATGTAATAATAGAAATAGAAATAAATATGACAATAAAACCAGTGAATCACGAAAAAAAACCGAAGGTCAAGGAAAATGGCTGGAAAGCTAGTAAAGTCGTCGGGAACCTCGGTGCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAGACAGGATAAGGGGTTAAAATGGAGGG # Right flank : CCTTCCCCAAGGTTTTTAAAAACCTGAAAAATCTAAGGATGATAAACATGCGATCTCACATGGTGAGTGCTTCGCAAACGCGCTGGGGTAATTGCCATGCGATCGCAACCGATGTTCCAAAACCACAAGTAAAAAACTGACTTTTGTTCTGGAGGTTTTAAGTAAATACGCCCCTAAGAAGGTTTAAGCTCTTTGGATCCCCCCAACCCCCCTTAAAAAGGGGGGCTAGTTGTTTTGTGTTTAGTTTATGAGAAGTTAGGGCTGCTTATATTATAATGGGGTAAGTGCTAGGGAGGAATGAAAAAACTATAGTTTTAACGGGGGTTAAGGACGATCTCACATGGTGAGTGCTTCGCAAACGCGCTGGGGTAACTGCCATGCGATCGCAACCGATGTTCCAAAACCACAAGTAAAAAACTGACTTTTGTTCTGGAGGTTTTAAGTAAATACGCCCCTAAGAAGGTTTAAGCTCTTTGGATCCCCCCAACCCCCCTTAAAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 6897-5866 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYN01000015.1 Cylindrospermopsis raciborskii CENA303 NODE_73_length_112493_cov_480.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 6896 36 100.0 36 .................................... AAAAATGGGTACTGACTACCCACAACTGAATAAAAT 6824 36 100.0 35 .................................... TTACTTTCTTGAATGCTACTAACCCAGCATCTCTC 6753 36 100.0 34 .................................... TGCAATAAATCTCGTGACGGTTTTTAAATTTAAC 6683 36 100.0 34 .................................... TGCAATAAATCTCGTGACGGTTTTTAAATTTAAC 6613 36 100.0 38 .................................... AAAAAATCTCTTGTATTTGATCAGGTGTCATCATTTCC 6539 36 100.0 37 .................................... TCTTCCTTTTTATCCTCCCTTAAACCCCCTCTCTCTT 6466 36 100.0 38 .................................... CAAGTAGTTGGTTCAAAAGTTCGGTTTTGTTCACTGGT 6392 36 100.0 37 .................................... GGTAAAGATAGCTTAGTCGCAGCACATTTGATTACTG 6319 36 100.0 44 .................................... CATAAGGCCAATGGAGCTAGCCACCTCTTTTAAGCCGATCACTA 6239 36 100.0 37 .................................... AGCCATTGTTGTACTCTCATTGTTTTACCCTCTAAAA 6166 36 100.0 38 .................................... GGCCTTGGCTGCTGCCTTGGCTGCTTTGGTTGCGTCGT 6092 36 100.0 37 .................................... GGTGTTTTTTCAGCAGTAACGCACTAAACCAGAGTAA 6019 36 100.0 34 .................................... TGCCATTAAATATTGTTGCTGGTTGTACTTCTAT 5949 36 100.0 13 .................................... CAATCATTAACAT Deletion [5901] 5900 35 75.0 0 C....-.........AA..CCC........C....T | ========== ====== ====== ====== ==================================== ============================================ ================== 15 36 98.3 35 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : GTGATTCGTAAACGCGCTGGATATTCCCTTACCTCTCCGTTCTCAAGGGAAGTTTATCAAGGTCATTAGGTGCGATCGCGCGTAGCGAGTGCTTTACAAACGCACGTAGGGAGCGATTCGTAAACGCGCTGGGAGTGATTCACAAACAGACCAAAAATCGTGACTGTGTTTTTTATCACCTTTATAATTTATTATTGGAAAAATGGAGAGAGTGTAGTTATAACAAGATATTTGGGATAAAATATTGAAAATTCTTATAATTAATGTAATAATAGGAAGAGAAATAAATATGACAATAATATCAGTGAATAACGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGTTCTAGACAGTAGACAGGGTAAGGGTTTAAAATGGAGGG # Right flank : AGGAGAAAAAAAATGACGCAACTAATAGGTATCTCGGGACCACTCTTGACATTGAAGCAGAGGGAAAACATCGGTCCCTACGAAGTTATCATTGACTTCGAAGCAACGAACGACCCAGACACACTGGAGAAATTGAAGGAGTTGGGGATGAGTGGAGGTCGGGGCAGCTACGACATGAGTGACGGTATACTAGAGATAACAATCCCGACAACAAAATACGGTGATATGTTTTTTTATGCCGTCCTCGATGAGGACCGCCGTATTGGTTTTGTATCCTATGGGGTAACTATAGATATGGATACCGGCGGCTCGAAGGTAGATGGTCACCTCACTATTAGCACATCCGATCTCTGTCATGAGGGTGGCTATGGCGATCCCCAAACCATTACCTTTTCTTCTGTAGAGATGGATTTCAAGATCTATAATTGAAACCAGCCAGCAGAATCACGAGGTTAGCTTGTAGTGGACTGTTTCAGCTAAAATGAGGCAATGTTCCCACT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 111230-109930 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYN01000015.1 Cylindrospermopsis raciborskii CENA303 NODE_73_length_112493_cov_480.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 111229 36 100.0 34 .................................... TACTTTCTTAAAGATAAACGACTATTAAGATATT 111159 36 100.0 41 .................................... AGGGAAATAAATTTTACATCTCCCTCGTGGTCGATGAGATT 111082 36 100.0 38 .................................... TTGATTTAAGTGACGTTAACTTGGCAGGTGCCAACTTG 111008 36 100.0 38 .................................... CTAGTAAGACTAGATATCTCCCCTAAAAAAATAATAAT 110934 36 100.0 44 .................................... CTTTTCTCTTACCTCCTTGGAGGTAAGAGATATTTTTCTATTGT 110854 36 100.0 36 .................................... GGAGAAGGTTAGTAAAAACGGTAACGCGTACTTCCT 110782 36 100.0 36 .................................... TATGTTAACAGACTATGACAGTACCGGCAATTACAA 110710 36 100.0 40 .................................... GCTAGGAAATACTATTGTGTGTATTTCCTTAAAGAGACTA 110634 36 100.0 40 .................................... TTGTTAATATGGAGAAAGTTATGGAAAGCATAACTTTGAT 110558 36 100.0 38 .................................... TAAAAAATATAGTTTCCGGACATCAAGCGTTAAATCAA 110484 36 100.0 39 .................................... TGCAATCAGAAACATTTTCCAGGAAACTTATAAACCACC 110409 36 100.0 38 .................................... TTACACTGAATTAATTGATGCTAATTTGGATTTTGCCA 110335 36 100.0 49 .................................... GTCCACTAAAAGCTGTTTCTGGTACCGTAGGAAAATGACCAACCAAGTA 110250 36 100.0 36 .................................... GGCGGAAGAGGATCCAGAAAGGTTTGCTGAAGTTCT 110178 36 100.0 36 .................................... TTATGCAACTAATCAAAGTTACATAGTTTTTTTAGT 110106 36 100.0 35 .................................... AGTAAAGATTTTACCTTTATAAAGACAAGAACTAT 110035 36 100.0 34 .................................... TAGAGGCTTTAAAGGTGGACGGGTTTTACGTGGA 109965 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 18 36 100.0 38 GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Left flank : TTCAGCCCACCCATTCTATCAGTTCTCTTATCCCAGACAACAAAACTAAAGCTAGCAGTACTAGTAAGAAAAGAGGTTGTTTGAATACTAGTGCAATAAACATTGTGATTGTCAACAATCCAACAAAGATGATGACTCTATTAGGCTTTTGTCTCTTTCGACTCTTTTCTTGCTTTGACTTAATCAATTTCTCAAGCTCAGATTCCGCCACTAAACAAGCTCTCTCTTAAAGTATAGATAGTGAAATGTAACTCCATTTGCTTGATTGTCTTGGTTGACGCTGTGCGATACAAGATCCCATCCGTCTGCTCCAGCAGCACTTAATAACTCTGGCAGAGTTGGTACTTCTTCAGTATTAGCAAACCAACCTTTCACCCTTTTTCCATCAATATCAAGAAGGTTTATTTCTTGAGTAATCCCTCTACCCTTAAAATCAAAGCGAATGTTTTTATATTCAAATTTTTTACTCATGATTTCCACTTTTGGTAATTAGTAAGAAG # Right flank : CCCTCCATTTTAATCCCTTACCCTGTCTACTGTCTAGACCCACTTTCCGAAGGTCAGAAAAAAAATCCCATTTCAGCCTCTTATACGTATTTAAAACATACCTCAAATCCTTATGGGACAAGGGACCGAGGTTCCCGACGATTTTACTAGCCTTCCAGCCATTTTCCTTGACCTTCGGAATTTTTTCGCTATTCACTGATATTATTGTCATATTTATTTCTCTTCCTATTATTACATTAATTATAAGAATTTTCAATATTCTATCCCAAATATCTTGTTATAACTATACTCTCTCCATTTTTCCAAAAATAAATTATAAAGGTGATAAAAAACACAGTCACGATTTTTGGTGTGTTTGCGAATCACTCCCTACGTTTGTTTGTAAAGTATTCGCTACACGCGATCGCACTCAATGACCTTGATAAATTTCCCTTGAGAACGGAGAGGTAAGGGAATATCCAGCACATTTACAAAGTACTCCCAGCGCGATCGCACATTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //