Array 1 138779-137754 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MAWV01000011.1 Streptococcus agalactiae strain DE-PW-196 NODE_1_length_402622_cov_75.4545_ID_1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    138778	    36	 100.0	    30	....................................	TACCGATTGTTAAAGGTCGCGGTCTAAAGA	
    138712	    36	 100.0	    30	....................................	AATAGGGCTAGTGCGACACTCTCGAGCTTA	
    138646	    36	 100.0	    30	....................................	ATTATTTTATAAAGTGACAAATATGTCTGT	
    138580	    36	 100.0	    29	....................................	CCAACCGTCCACACTATACCCTAAAAGTA 	
    138515	    36	 100.0	    30	....................................	AAACTAAAGATATTGACTCCCTGCAGGATA	
    138449	    36	 100.0	    30	....................................	TCTTAATTTAGAACCTTTTTTACTTCCTTT	
    138383	    36	 100.0	    30	....................................	GGATGATTTCGATTATGCGGCGGTGGTTGA	
    138317	    36	 100.0	    30	....................................	AAATGTTAATTTCATATCTACATCTTGTTC	
    138251	    36	 100.0	    30	....................................	ACATAACGTTCAAAAGTTTCCACTAATAGC	
    138185	    36	 100.0	    30	....................................	TCAAACAACATTGGTGATCTTATTGCGGTA	
    138119	    36	 100.0	    30	....................................	TTATTTAAGACGTGATTTAATGTTAAAACT	
    138053	    36	 100.0	    30	....................................	CAAACTATCTTGATTATAAGTGGACTGATA	
    137987	    36	 100.0	    30	....................................	ATTTTTACACGAGTGCTAGAAAACGGGGCA	
    137921	    36	 100.0	    30	....................................	ACATTTGTTAAATTTGAACTTACTGGAAAT	
    137855	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA	
    137789	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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