Array 1 8608-10378 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGC010000023.1 Dickeya oryzae strain A642-S2-A17 A642_(paired)_trimmed_(paired)_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8608 28 100.0 32 ............................ ACTGATACTGATGTCCGAAGCCCCAGCAGTAA 8668 28 100.0 32 ............................ AGAAATCAATGCACCGGTCAGCGAATACAATC 8728 28 100.0 32 ............................ AACCAGCCGCCGAAATCGGCAAAAACTGCATA 8788 28 100.0 32 ............................ TCCAGATTGACGATCAGATCACCCACCGCCTG 8848 28 100.0 32 ............................ GACCACGGGCATTCTCAGTCGTGACGGCAAAC 8908 28 100.0 32 ............................ ATACTTAACACTCTAGAGCTTTGTATGAAGTT 8968 28 96.4 32 ...........T................ TGATTGAATGGGAAAATCTGGATTTCCCGGCG 9028 28 100.0 33 ............................ TTATCGGTATTTGTCCAGCAATCGGCTCAATCC 9089 28 96.4 32 ...........T................ GCAGTATCTAACAGCGACATATTATCTCTAGC 9149 28 89.3 32 ...........CAC.............. AGTACCTCCAGCGTGTACCGGTATTCAAATGA 9209 28 92.9 32 ...........CA............... CGAACAGATGAAACAACGCTTTCAGCAACACG 9269 28 92.9 32 ...........CA............... GATTAGACGGCAGCATGTTGTCCCGGGTGGCC 9329 28 89.3 32 ...........CAC.............. ACGCGTGATGCCGGTCGGAAATGCCCCGCCAG 9389 28 89.3 32 ...........CAC.............. TGACTGTTATAGTTTTTCGCCATCTGCGTGAT 9449 28 89.3 32 ...........CAC.............. AGAAACTTCACGGACTGCGCTCGGCGTTCCGT 9509 28 85.7 33 ..........ACA..............G GAAATTCGATGACCCATACCCACGGGTTAGCAA 9570 28 92.9 32 ...........CA............... GGCACCATTGGTGCTGGTGGGTCGGTGTAGCG 9630 28 96.4 32 ...........T................ AAGCGGACCAGATCTGTCAGCGTGCATTTACC 9690 28 96.4 32 ...........T................ GCCGGGCGGTGTATTCAACGGCAAAGGCGCTG 9750 28 96.4 32 ...........T................ GAACATCTCATGTAGTTTCTTAATCATCGGTA 9810 28 96.4 32 ...........T................ ATCATCAGCATCAGACGTCACTGTGTTGGGAT 9870 28 92.9 32 ...........CA............... CATCATCACGGATAAGCCGCCGGTCATAACGG 9930 28 92.9 32 ...........CA............... TGATTCACATACATCGTAATGATGCCATTGTT 9990 28 85.7 32 ...A.......CAC.............. CCTTTATGCCCTCTCTTCGTCGTTGCCACTTG 10050 28 89.3 32 ...........CAC.............. GTACCGACACAACAGCCGGGTATCGAGCGCAG 10110 28 92.9 32 ...........CA............... TTATTATTGAGGCCCGTTTGATACATGCCGCT 10170 28 100.0 32 ............................ CGTAAAGTGCCGCCCAGCGACAAAGGGCCGTC 10230 28 100.0 32 ............................ AGACAAATTGAGGAATGGGCTATTCGCGTTGT 10290 28 100.0 32 ............................ TTTGCCATCAGACCGTAGCCGAAGGCCCGAAA 10350 27 89.3 0 .......................-..CG | GG [10371] ========== ====== ====== ====== ============================ ================================= ================== 30 28 94.8 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGATGTATTAACGGTGCCAACTGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAACGCTGAGCGTCTGCGCCGCCGGGCGGTGAGCAAAGGCCGAATGACTGAGGATGAAGCCGCCGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTACCGCTGCGTAGCCTTTCCAACGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTACAGGACAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTCCCGGTAAAACGGCGGTTTTTCTTTAACAATCAGGCGATAAGCGATTATTCGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTCCGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCAGCGGCGTAGTTTAGCCATTAAGCCAGAGGTTAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAACCACCCACCGCCCCACATACATTCGACAAACACATTCGCCAGCAGCACCTCGGCTGTTGCCAACAGCCCATCCCCGGCGGGCATCGCCGTTTCCTGCAAGGAAAAAAATCCCCCAACCGTTACCAGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGTACGTTGTGATGGTTTAACCCGGCGATGCAAACACGGCCGCTGGCGATG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 16433-15445 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGC010000023.1 Dickeya oryzae strain A642-S2-A17 A642_(paired)_trimmed_(paired)_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16432 28 96.4 32 ...........C................ GATTACATGCTGACCCAGAAGGGCAGCGAGTT 16372 28 96.4 32 ...........C................ ACTATCACAGCCTTAACAGATTTTCAGTTGCC 16312 28 96.4 32 ...........C................ TGCCAGTGGTGAAATCACCGTGGAATGGTCAG 16252 28 100.0 32 ............................ AGCCATCTGTGATTGCGAAGTGATAGAACTGT 16192 28 100.0 32 ............................ GATCGCACTGAACTATTACGGCATTGTTGGAA 16132 28 100.0 32 ............................ ACGTATCCAATTTAGATCGAGTCGGGGAATCA 16072 28 100.0 32 ............................ AGAGAACCGTGTGATGGCGAAGGCGGCTGAGC 16012 28 100.0 32 ............................ TCCTCAGGAGAGCAGCAGATGGTATTTCACAC 15952 28 100.0 32 ............................ ATCAACACAGAAAAGGGCACGTGGGTCGGCAA 15892 28 100.0 32 ............................ CGCTGGTCGGCGGCTGCATCCGCAGGCGTAAA 15832 28 100.0 32 ............................ GTTGCCCGGATGTTTTTCGCCCAGATGGAAAA 15772 28 100.0 32 ............................ CGGTTGGGCCATAACGCATACCTCCGTAAAGT 15712 28 100.0 32 ............................ GTATGCCAGCACCAGCCCATAAGCCAGCCAGC 15652 28 100.0 32 ............................ CCCTTTTGCTTTCCATGGCATTCGATTTTGAC 15592 28 100.0 32 ............................ AGATCCAATTCGAGGTTGATCGCGCACCAGGC 15532 28 100.0 32 ............................ GCATTGTTGGATTCATATTAACCAAATCTATT 15472 28 75.0 0 .............C.......GGT.GTG | ========== ====== ====== ====== ============================ ================================ ================== 17 28 97.9 32 GTGAACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGAAATCCCGCCCATGGCGATATCGCACTGGTCGGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGTGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCGCGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACCAATATCGACGTTGACCCTTTTTTTTCGCCCCGTTATAACTCGTTGATTTTCAATGATGACAAAGGTGGGTTTTAAAAAAGGGTTTCACGCCCCAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACTTAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGCGACACGGTCTATCCCGCACGAAACCACCCACCGCCCCCGCATACATTCGACAAACACATTCGCCAGCAGCACCCAGGCTGTTTACCAACAGCCCCTAACACGCTACTCAACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCATAACCTGCCCCCAGCGCCAGCAGCCAAAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //