Array 1 414081-415372 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJY01000002.1 Listeria monocytogenes strain FSL L7-0251 NODE_2_length_420203_cov_153.717697, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 414081 36 100.0 30 .................................... CTTAAATCACGTCAAATTTGCGCCGGAAGC 414147 36 100.0 30 .................................... TGTGGCGGTTGGGTCTTGGTGTCGGTTTTA 414213 36 100.0 30 .................................... TTAAGTCGACCACTTTTTCCCGCTCTGTGA 414279 36 100.0 31 .................................... TATCTCCTTTCTTCAAAGCCACATAGCAGTA 414346 36 100.0 30 .................................... GGAAAAATTAGAATTAACTACATCTAAAAA 414412 36 100.0 30 .................................... ATTCCTGTAGTCATCAGTGTTCCAGTAGAT 414478 36 100.0 30 .................................... TCAATGCCTCGCAAGCTGCCGTAGTACGCT 414544 36 100.0 31 .................................... AGAGTCAGCAGAGTTACGGGTCTTACAATTG 414611 36 100.0 30 .................................... AAGCGTTACAAGTGTTACACAGAGCTATGA 414677 36 100.0 30 .................................... GTTCAATGTACCGCTTGAGGAAGTAACTAA 414743 36 100.0 30 .................................... CAATGGCAACTTAGGAGTTTTCAGCTACTA 414809 36 100.0 30 .................................... AAATTCATGTGCGAATAAATAGGTGCTTTC 414875 36 100.0 30 .................................... GAACAATTATAGATTGGTTCGGTTCAAGGA 414941 36 100.0 30 .................................... ATAATGTTGCTAAAATTAATAAAACGGCTA 415007 36 100.0 30 .................................... TAAGAGAGTCAAGGCTTCCAAGTTTCGTGT 415073 36 100.0 30 .................................... TTTGGGTACGCATAGTATGCGAAAAACCTT 415139 36 100.0 30 .................................... TCAAGCCGCATTCAATCAAAGTATTCAAAC 415205 36 100.0 30 .................................... GAAAACTTTGTGGATCGTGCAGAAAAAATA 415271 36 100.0 30 .................................... CAAGAAGAGGGAAAGCTTAAGTATCCATTT 415337 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CTAATATTCTCCCCCCATGAAAAAAACCTCAATCATTTTTATTTTTTGCGCACTCCTGCTAACCGCCTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCTATTTTAATTAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCATGACGAAACGGGAAATAAAATAAAACGAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGACTTCCAAATCCAAGAAACCTCACCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTCGCCCACAGAGAGTTTTTTCTTTTCTCAAAAAAATAAACTCAAATCCCTTGCCTTGGTGTGAACTCCAGGGTTTATAATTCTATATGTAAAGAACGAAACGAGGTGATGGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 10714-10230 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJY01000003.1 Listeria monocytogenes strain FSL L7-0251 NODE_3_length_314168_cov_140.395185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 10713 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 10649 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 10584 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 10520 29 100.0 36 ............................. CAACTTGAAACCTAGTCTGATAACATAATCAACAAT 10455 29 100.0 36 ............................. ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT 10390 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 10324 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [10300] 10258 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 93.5 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCGTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCCAAAAACAAACCCCTCATTAATTGGGTCTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //