Array 1 24116-25163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHYBE010000042.1 Pseudomonas aeruginosa strain CriePir86 NODE_42_length_55318_cov_36.1145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24116 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 24176 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 24236 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 24296 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 24356 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 24416 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 24476 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 24536 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 24596 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 24656 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 24716 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 24776 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 24836 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 24896 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 24956 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 25016 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 25076 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 25136 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35816-33688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHYBE010000042.1 Pseudomonas aeruginosa strain CriePir86 NODE_42_length_55318_cov_36.1145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 35815 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 35755 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 35695 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 35635 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 35575 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 35515 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 35455 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 35395 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 35335 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 35275 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 35215 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 35155 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 35095 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 35035 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 34975 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 34915 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 34855 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 34795 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 34735 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 34675 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 34615 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 34555 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 34495 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 34435 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 34375 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 34315 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 34255 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 34195 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 34135 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 34075 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 34015 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 33955 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 33895 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 33835 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 33775 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 33715 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //