Array 1 175597-174712 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDON01000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 160 NODE_3_length_616571_cov_25.0286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 175596 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 175534 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 175473 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 175412 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 175351 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 175290 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 175229 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 175168 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 175107 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 175046 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 174985 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 174924 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 174863 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 174802 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 174741 29 96.6 0 ............T................ | A [174714] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 193104-191856 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDON01000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 160 NODE_3_length_616571_cov_25.0286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193103 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 193042 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 192981 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 192920 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 192859 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 192798 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 192737 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 192676 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 192615 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 192554 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 192493 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 192432 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 192371 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 192310 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 192249 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 192188 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 192127 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 192066 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 192005 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 191944 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 191883 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //