Array 1 119060-117095 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJR01000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 119059 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 118998 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 118937 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 118876 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 118815 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 118754 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 118693 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 118631 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 118570 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 118509 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 118448 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 118387 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 118326 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 118265 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 118204 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 118143 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 118082 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 118021 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 117960 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 117899 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 117838 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 117776 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117673 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117612 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117551 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117490 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 117429 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 117368 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 117307 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117246 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117185 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117124 29 96.6 0 A............................ | A [117097] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 136501-135191 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJR01000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 136500 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 136439 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 136378 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 136317 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 136256 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 136195 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 136134 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 136073 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 136012 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 135951 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 135890 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 135829 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 135768 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 135706 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 135645 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 135584 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 135523 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 135462 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 135401 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 135340 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 135279 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 135218 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //