Array 1 1104180-1102804 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831786.1 Massilibacterium senegalense strain mt8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1104179 32 100.0 35 ................................ TATTTCCTCCTTGTTTAACTTTCTATCTTTATTGT 1104112 32 100.0 33 ................................ GTTGTCTGTGCTTAACAAATGCCACTCCAACTT 1104047 32 100.0 33 ................................ GTCGCCTTACAACTCTAGTGTCTAACCCTACAA 1103982 32 100.0 35 ................................ ATATGTTCATTGCATAGTAGAAAAGTAAGTTAGGT 1103915 32 100.0 35 ................................ TTCTTTACATTTTTAATAACTTTACTTAAAACAAA 1103848 32 100.0 36 ................................ CATTTCCTCCTTAGTTATTTCAGCGCCTATTTCATT 1103780 32 100.0 33 ................................ TGGCTCTGCATCCAGCAATCCCACTATATAAAA 1103715 32 100.0 34 ................................ TAAATAATAACTATTATACTTCTTTTTTCTTAAA 1103649 32 100.0 35 ................................ TCCTTCTTGCATTTGGTTCAGATTATCGAGACAGA 1103582 32 100.0 34 ................................ TTTAATTAACTCGTTATGACTATACAATAATGCT 1103516 32 100.0 33 ................................ GCGCATTTGGTTTTCGTTTGGAACAAAACTTTC 1103451 32 100.0 37 ................................ ATGAAGTGCATCTGAAGTGTCCAACCTTCCGATGCGA 1103382 32 100.0 37 ................................ TCCAACACTTAAAGAATATTGGAGTAAGGAAGGAGTC 1103313 32 100.0 36 ................................ GTTTTTTTAAATAAATTTATTATTATTTTACTTTTA 1103245 32 100.0 35 ................................ TAACTCGACCATGAAGTTTGACGAGATTGTCGATT 1103178 32 100.0 37 ................................ ATTTTCTCGCTATACAACTTATTAATATCTGCGATAA 1103109 32 100.0 35 ................................ TTCATAATAATCGGTTGAAACATATTGCAATGCCG 1103042 32 100.0 36 ................................ TCCTTTTTGCAATTCGATTGGTTCGGAAAACACATT 1102974 32 96.9 36 ..T............................. ATTACTATCGTGGTAGATTGTATTTCAAACAGGATA 1102906 32 100.0 38 ................................ ATGAAATACCTTTGGCACATATTGTAATACCCATCCAT 1102836 32 100.0 0 ................................ | T [1102809] ========== ====== ====== ====== ================================ ====================================== ================== 21 32 99.9 35 GTCACACTCTATATGAGTGTGTGGATTGAAAT # Left flank : GGCTCGAAAAAAAGAAGAGCAAAAATTCCGGGAAATTCAAAAACAAAAAGAGCAGAAAAAGCTAGCAGAGAAAAAACGTATACAAAAGCAGTATGAGAAGGAACAACGAAGGCTAGCGAGTTTAACACCAGCTCAGCGATTAATCGAACAAATTCAAACATTAACAGCTAGTCACCAAGATATAGAGAAGTCAAAAGGTGTTATTTACAAAGAAGTATTACGCATAGCTAATGAAGTACCGGAGTTAGCTTCCAAGCTATTAAGTTATTGGAATAATTGCGATATTGGTAAACTATCTAAAAAGCAACAAGAAAAAATAAGAATATTGAAAAGATTTTTATAAAACATAGTTTGCGCGAACCTAAAGTGCCCATAAAATCCCTGATAGGTTCGCACACTAAATGGGCTGATTTTATAATAATTGATAAGATGAAACAAGGTTATGGTTTTATTTATCACTACATATAGTATATTAAGTATAGCAATTACTATATCTAGCG # Right flank : CAAAATAGGTTTAAATATTATGTAATGATAGAATATTTTGAGTGAAGTATGTTAAAATAATTTACGTAAAGTAATGACATAATGTTATAAAACAGATGAACCATGAAAGTAATATGTCATCTGTTTTTTGTTAGTAGGAATAGATAATTCAAATAGAAAGAATGTACAATAATATGATATTATTAAATTCGTTGATATTTTTTTGTGTGGATACAATGAAAGGATGAAATATATGAGTAACGAGCTTCGTAAAACCGTAGCTATGTATACATTAGGTTGTAAAGTAAATCATTATGAAACAGAAGCGATTTGGCAATTATTTAAAGAACAAAATTATGAACGCGTAGATTTTGAAAGTACAGCAGATGTCTATGTGATCAACACATGTACCGTAACGAACACAGGAGATAAAAAAAGCCGTCAAGTGATTCGTCGTGCCATTCGTAAAAACCCAGATGCGGTGATTTGTGTTACAGGGTGTTATGCCCAAACTTCTCCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACTCTATATGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1118879-1117046 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831786.1 Massilibacterium senegalense strain mt8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1118878 32 100.0 33 ................................ GCAGATATTAAAGAGGCACTGGGAAAGTCTACA 1118813 32 100.0 34 ................................ TACATAGCTCTGAGAGAGGTGATGGATGATACCA 1118747 32 100.0 35 ................................ TACATCTTTATACGGTTTTATACCGTAATCATGGG 1118680 32 100.0 35 ................................ TTTGAGCAGACACTGTAGCTCATTTATTTTTTTAT 1118613 32 100.0 33 ................................ GTAGAAAACCAACAAACAGAACTTGAAAAAATC 1118548 32 100.0 33 ................................ TGGAATGCCTGTATCTTGTTCAAAATCACTCAA 1118483 32 100.0 36 ................................ GATGGTCGCGACATTGAAGAAATGGACGAAGAGGAC 1118415 32 100.0 34 ................................ CATGACCATTCATTAGAGGTCCTTACGAGCAAGT 1118349 32 100.0 34 ................................ TCGTTGCCCGCCTAAAATATCCACCTTCATTTGC 1118283 32 100.0 35 ................................ TTCACCTTCTTTCACGTTTTACAAAAATTCATAAG 1118216 32 100.0 35 ................................ CAATGCAGACGATATGAAATACATCGGGAATAATA 1118149 32 100.0 34 ................................ TACTACCTGGTTCATCATTTCTTGTGTTAAACCG 1118083 32 100.0 36 ................................ CCTGCAGTACCTGAAATAAGAAGCTCGACTTACCCC 1118015 32 100.0 35 ................................ TTTGCTAAACGATTTTCCCTTTCTTGCACTGGATG 1117948 32 100.0 34 ................................ AGGATGGGAAGTAAGAGAGCAAGTTGTCTATTTT 1117882 32 100.0 34 ................................ GCATATTCAGTGGCTGCAGCACTTAGTCACGATT 1117816 32 100.0 35 ................................ AATTTCTTATGAATTACATCCACAGCTTCCCTGCA 1117749 32 100.0 33 ................................ TAAATATTTATGGTAGAGGAACTAAGATACAAA 1117684 32 100.0 37 ................................ GTTTTAATCCATTAGATGGACAAGGTGTTACAAACAA 1117615 32 100.0 34 ................................ CAGACCCAGAACAATATCCCGACCCTAATGCACC 1117549 32 100.0 35 ................................ CCGATTGCATATGGTACAGGAACAACATGGCATGG 1117482 32 100.0 39 ................................ CATTAATTTTTTGTTACAGGATGGGCACCGCACATCCTT 1117411 32 100.0 33 ................................ TCATCCCAACCTAGGATCTCTGCAACAACGAAC 1117346 32 100.0 36 ................................ CGTAATCACGATGGACATTCCGTGACAAGCTGCGTC 1117278 32 100.0 34 ................................ GTACTTACGATGTCCTTGTGTGTGCCGGGACGTT 1117212 32 100.0 36 ................................ CATTTTTAACTTTTAGGTATGTTTCCAGTAACCTAA 1117144 32 100.0 35 ................................ AAAATAATCGTCTTGATCTTTTGCTGTCACATTTT 1117077 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 100.0 35 GTCACACTCTATATGAGTGTGTGGATTGAAAT # Left flank : AAACAATCAAGTATTATTAGCAGAACGGTTAGAACAAATAAAACCTGGTAGTACGATTGCGCTTATTGTAGGTCCAGAAGGTGGGCTAACGGAGGAAGAAGTAGAAGAGTTTTTGAAACATGGTGCACAAACAACGAGTTTAGGCCCAAGAATTTTACGAACAGAAACAGCACCATTATATTTTTTATCTACTGTTTCGTATCAATTTGAAATGCGGAGATGAGCCAATATGTTAATAGTTTTTTTTAATACGTTAAGCTGTGGTGTTGTAAATGTAACTATGATTCTTTCTAATATGCATGATTATTAGAGATATTATTATTTAGAAAAGATTATGCCAATTCGTTTAACCTGTGCGAACCCCAAGTGCCCATGAAAACCTTAGAAGGTTCGCACACTTTTTATCGGCTTTTAGTATAATATCGACGACTTTCTTGTAAAGTATTTCTAAAAAACACTAAATGTAGTACGCTAAGAGAGCGAGATTACTATATCTCGCG # Right flank : CTCTTATTAAACGCACCATCAGCACAAGGCTTATAAAGTCTGGATAGGCTACACTAAGTTGGACAATAAAATTAAGGTCTAGTAGAGTAAAACAAAAGTAACTGAAATGGAGAGAATCTACAATGACCGAAAAAAGAACACGCAGAACATTTAGTCCAGAATTCAAAAGCCAAATGGTCCGACTTTATGAGAGTGGAAAGCCACGTGCAGATATCATACGCGAGTACGATTTAACAGCTTCAGCGTTTGATAAATGGGTGAAGCAAAGCCTCCGGCTCCTTTAAAGAAAAAGATAATCGAACACCGGAAGAAGAAGAGTTGTTGAAACTACGTAAAGAAAATCAACGTTTACTGATGGAGAATGATATTTGCACCTAAAGGTATAAAAGTATCTACGCATTAAAATGCTAGATACTCTAAAAAGCAAGCCGCGCTGATCATGGGACGAAAGTAGATGTCATCCGTAATAACGCTCACAAATACTTGGTACCAGCAATGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACTCTATATGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 58266-57226 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831785.1 Massilibacterium senegalense strain mt8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 58265 32 100.0 36 ................................ AAGTAAGTACTCTTTAAAATCCGCTACTGTTTTTAG 58197 32 100.0 35 ................................ TATAGGAGTGACAACACTTTAATTTTTAGACCAGA 58130 32 100.0 34 ................................ GCAATAATAACCATAATAAACATAGCTACTTTTT 58064 32 100.0 36 ................................ TGCTAAGCGGCATGATGGCACGAAGGCGAGGACGTC 57996 32 100.0 35 ................................ GTGCATTTGCACGATTTATACGTAACTAGTGTAAT 57929 32 100.0 35 ................................ GAAAGAATGGAGATGATTAAGTGAAAAAGGTTTTA 57862 32 100.0 33 ................................ ACTTTAGATCAAATCGAACAAGCCTACTTTGAT 57797 32 100.0 36 ................................ TTAATCCGGGGGTTATGTTACCGTCTACATTTCCCT 57729 32 100.0 35 ................................ CGACCGCTAACACGTACAGTTGCCTACTCGTTCGT 57662 32 100.0 35 ................................ ATTGTCTGTGCTTAACAAATGTAATTCTAGTTTAG 57595 32 100.0 38 ................................ GCATACGGAGCAAAGTTAATTGCAATACGTCCATACAT 57525 32 100.0 34 ................................ CCTCTCCGACTGTGCGTCTAAATTTACTGCAATT 57459 32 100.0 34 ................................ CATGTATAGGAGCGGGAATAAAAGTGCCGAAAAG 57393 32 100.0 34 ................................ CGTTCGAATTGTTTACGTGGCAAAAATTTTTGAA 57327 32 100.0 38 ................................ TGCGGGTGATTTATTTTACCGATATGTGATGATAAAAG 57257 32 90.6 0 .......................AG...G... | ========== ====== ====== ====== ================================ ====================================== ================== 16 32 99.4 35 GTCGCACTCTTCATGAGTGCGTGGATTGAAAT # Left flank : GGTGATTTAGATGGCTATCCACCACTACTCATAAGGTAGGTGTAAAATATATATGTTAATGCTTGTCACATATGATGTACAAACGACAACATTAAGTGGCACTAAACGTTTACGCAAAGTTGCTAAAAAATGTGAACAATATGGGGTACGTGTCCAAAATTCTGTTTTTGAATGTATTGTAGACAGTGCGCAAATGAGACAACTTGAACTAGAACTAGAGAAGCTTATTGATCCAAAAGTAGATAGTCTTCGTTTTTATCGTCTTGGAAACAATCATGATAATAAAGTAAAACATATTGGTGCTAAGCACTCATTAGAGGTTGATAAACCCCTTATTTTTTAATGTGCGAACCCCAAGTGGTCATAAAATATTTGGGAGGTTCGCGCAAAAAAAGCACTGTATTTAAATTTTTTTGATAGATTAGATTTTAAATAAATCTACAGATTATATTACACTACAATATCTAGTCGAGATAACATTATTTTAACTATATCTCGCG # Right flank : TTTTCATAATGGTGCATGTTTTGATTGTTTCATGGTAACGGGTTGCTATAATGATTAGTGTTATGATAATTCATTAAATGTTTATACCATTTCGATTATTACAATAATCTAAAATATAATCTTTATAACGATTACTATAACGATTTATATTCTGAAGACTTATATAGTGAATATTATGAGAAAAGGATAACGAAAAAGCCGCTGTACCTATTTAGTAGACACAACGGTTTTTTTCATATTATTGAATTAATGTGGGGAATTGTTCTAATGTGGTGGAATGATGAATACGCACCCTTTGTATTAATAATTTTTCATCCCGTATACCTGTTTCTTGAAACTTTCCATTCTTCGTTGTTACAGCAAATTTATAATATTTTTTCGTTTCTTCTACTACTTGATCATTAAAACGACCGATTGGATAGGCGAGTGAAATAACAGGCTTTCCTGTAGTTTGTTCAATCTTTTCTTTAGATGCTTGTAATTCATATGTATAGTCTGTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 138030-136693 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831785.1 Massilibacterium senegalense strain mt8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 138029 30 100.0 37 .............................. CGTAGTCAACTGCAATTGTTTGTATTAAATGTTTTTT 137962 30 100.0 36 .............................. TCACTGGTGGGACAAGCAATCCGAAAAAGTGCGGGA 137896 30 100.0 23 .............................. GGCTCTGGATTCGGCTCTGAATT Deletion [137844] 137843 30 100.0 36 .............................. AAAAGAAGAAGCAAAAGAAGTATCGGAACAACCAAA 137777 30 100.0 38 .............................. TCCGTTAAACCTAGTAAATAATCGGTGGATGTTTCTAA 137709 30 100.0 37 .............................. ATTACTAGTTTACCACCTTCCAGCAAGTCTCCATCCA 137642 30 100.0 36 .............................. TTATCAAATTCGGGCGTGGATTAGCGTTGTTTAAGT 137576 30 100.0 35 .............................. CCAGTCAAAGCAGAAGTTATGACTGGAATCGGCTC 137511 30 100.0 36 .............................. AGCACCACCTCATCATGGATATGCATAACAGTTTGG 137445 30 100.0 35 .............................. AATATGTGTCGCGCGAACGTTTGAAAAACGGCACG 137380 30 100.0 36 .............................. CTTGAAGACTGACTGCCATCGAATGCTGGTGGAATT 137314 30 100.0 36 .............................. ATTGGAACAGCCCTTCTTCCCATTGCATCCACCTCC 137248 30 100.0 35 .............................. ATCGCAATTCAAAAGGGTTGGGAATCTGAAATTTC 137183 30 100.0 35 .............................. AGTGTTTGAGAGATTCGTCTCTTTGTTAATCTCTT 137118 30 100.0 36 .............................. CTTGCCTTGCGATCATCTTCTTCTGTGACGTGCGAA 137052 30 100.0 36 .............................. GCGATTGTATCGAGTTGTTCAGGTGGAAATCCCGCT 136986 30 100.0 35 .............................. TAAAGTCTGCAAGTGGATAAACGTGTGTGAACCAA 136921 30 100.0 36 .............................. TTTAGCCACTTGCCTTCTTTGTCTTGTTTGAACGAG 136855 30 100.0 36 .............................. AGTGAAGTTTACTCGGAATGATATTTCGATTCCTTT 136789 30 100.0 37 .............................. TCGATAAAGAAGTGCAAATAAACCCAGTTATCCTTAC 136722 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 100.0 35 GTTGAACATTAACATTAGATGTATTTAAAC # Left flank : CCCCTTTTAATAAACGAAAAGAAACATCTGTAAAAATTGTTCGATCGCCAAAGCCATGACTTAAATGACTGACAGTTAAAATACTCATGGTTGTTCCCCTTTTTTAAAAATGATTTAATTTTAAATTTCTGCGTATTTTTTATGAAACGATAAAAAAACATCTTCATGATATAAAAATTCCAATAGCAAGCAGACAGGATGGTATCTATGAAAAAGTTTAACACGATATTAAATATTTTATCTACTTTTAAATAGGGGTTTTATTATTTAAATAAGAAAGAAAATATTATGTCCCATTGCCTCCAATTAGTTTAGTCAATTTACTTTTCTCCAAGTGGACATGATTAGAACATAAGCTGAAACCTTGTTATATCAATGTTTATTATAAAAAAATACGAAAAATGTACTTTTAATGATTAGGTTGGAGAAAATTAGTAAAAACCTTGAAATAATAATATTTTTGAGATATTCTAAAAATATGAAGTCTTTATTTATCGGAG # Right flank : TTGCTTACAGTGTAGATGGTGGCACTACACAAGTTGTGTTGAACATTAACAAAGGGAAAAATAGATTTTAACGAAAAAATAAAAGATCGATTAGAAAAAGACTACAAAGGAAAACGAAAAATACGACAAGATGCCATTCGCCATGTGGACGGGATCATTACCAGTAATGATAAATTCTTTGAAAATATGAGCGATAGCGAAATAAAAGTATTTTTTGAACATTCGCTTGAATTTATAAAAAAAGAGTATGGAGAGGAAAATTTGTTATATGCAACGATTCATTTGGATGAGAAAACACCACATATGCATTTTGGTCTTGTTCCTCTTACGAAAGATGGACGTTTGAGTGCAAAAGAGGTCCTTGGTAACAAAAGGAAATTAAGTGCCTTGCAAGACAAATACAATGCTTTTGTAAATGAAAAAGGATATGACATGGATCGTGGGGAAACTACCATTGATACAGAACGAAAACACAAAGAAATGAACGTTTATAAACAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATTAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 407066-405193 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831785.1 Massilibacterium senegalense strain mt8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 407065 24 95.8 42 G....................... GTATGAATGAGACCCGGTGGAGTTCCTTCTGTTTCGTAAGCC 406999 24 95.8 42 C....................... GTATGAATGAGACCGCCTTAAACGTTCTACACGCTTTCACCA 406933 24 95.8 42 C....................... GTATGAATGAGACGTGATGGACTTATTGATAAGCAAATCGCT 406867 24 95.8 43 C....................... GTATGAATGAGACCAAGTAATCTACCGGAACGCCATTGGTGGA 406800 24 100.0 42 ........................ GTATGAATGAGACTGATGCAGTATGGATTCCGAGGTATGGAA 406734 24 95.8 42 A....................... GTATGAATGAGACTTTATTGTGATGAGTGTGCTTACGAATTG 406668 24 95.8 42 G....................... GTATGAATGAGACCGCTCGCTTGCTATTAACCTCTTTGTTTG 406602 24 100.0 42 ........................ GTATGAATGAGACAGATATGCTTGTTGGACAGCCTCCTCAGT 406536 24 95.8 42 A....................... GTATGAATGAGACGGCCCGTGCCATCCGCCAGCCGTACCGTA 406470 24 95.8 42 G....................... GTATGAATGAGACGATAAGGGTACGGGAATGAGTGATTATCC 406404 24 100.0 42 ........................ GTATGAATGAGACAGGGCTAAGGTAATTAGATTACACCTTAG 406338 24 100.0 42 ........................ GTATGAATGAGACTTCATAATCTCCTGCATCATTTCCAATTG 406272 24 95.8 42 C....................... GTATGAATGAGACATACTCTAACAAATTACATCCCGACAACA 406206 24 100.0 42 ........................ GTATGAATGAGACTCCATTTACCCGTCTCCTTTTTATAAAAT 406140 24 95.8 42 A....................... GTATGAATGAGACATCTTTTCTCTGTTCTTGTAGATTGTACA 406074 24 95.8 42 G....................... GTATGAATGAGACAAGGTTGTATTGTACATCGTGGAATTAGA 406008 24 100.0 42 ........................ GTATGAATGAGACCGAAGCACACTTTATGTATGGTTTTACTA 405942 24 100.0 42 ........................ GTATGAATGAGACAATAATGACATTGTTGTGTTTAGCGACAA 405876 24 100.0 42 ........................ GTATGAATGAGACCTTCAAAATCTCTTGATGTTTTGCAATTC 405810 24 95.8 42 G....................... GTATGAATGAGACGAAGCAATTCCAGTTTTGATTGTTACAGC 405744 24 100.0 42 ........................ GTATGAATGAGACTAATTTTACTAACGTTTCCTCTGTTAATT 405678 24 95.8 42 G....................... GTATGAATGAGACACCGGAGTGCCAAAGTCCTCGTGCAACTG 405612 24 100.0 42 ........................ GTATGAATGAGACATATTAAAGGTTATAAAGAAGTGCTAGAG 405546 24 95.8 42 C....................... GTATGAATGAGACTACATAAAAATCGTATAGTTTGTATTTAC 405480 24 100.0 42 ........................ GTATGAATGAGACGACACAACGATTAAGAACAACATTCGAAC 405414 24 100.0 42 ........................ GTATGAATGAGACATTTGCCACCTAACATGTCGGCGCCGTAT 405348 24 95.8 42 A....................... GTATGAATGAGACAAATGGATTAACTAGATCAATCGCAACTG 405282 24 100.0 42 ........................ GTATGAATGAGACGCAAAGGCGCTACAGGAAGAAGTTAAATC 405216 24 95.8 0 G....................... | ========== ====== ====== ====== ======================== =========================================== ================== 29 24 97.7 42 TGTTTTAGTACTCTGTTATTTTAG # Left flank : TTAAGTCATGGTCAATCTATTTTAATTTATAGGTTTCCTGAAGCGTATTTAAGTGCTAAAGAACAGATGATTTTAAAAAAAGTTTTAGATAAATTTGCTGAAAAGATTAAGATAATCGTGCATACTGAATCTAAGTATTTTCTAGCTGATTCAGTATTTGCTAATAACTATTTTTTTAATAATCAACAAAAAATCACACAGGAATTTATCGGAAATCTAGAATGGAATGCACCTCTTGATTATAGTAGAATGGAATTGGAGAATAGTTTTAAACAAATACTATTTCGATATATTGATAAATTAGAAGTATGTCCTGTTATTTCAAATTACAAACTAGCAGATATTATGTTGTTTGAACCCATTGATATTTATACATGTACAAGTTTTTTGAAGTATTGTGGATATAAGTTTCAGTTAGATTTAGATCGAAATAAACTAAATGAATCAGTTCACGTATATGTTCAAAAACTTTATGAAAATATTTAAATTTTTTCATTAGA # Right flank : GTATGGCAGAAAAAAGTTTTATCAATAGAACTTTTGATCATAGGTTCTTTCGTAAAATTTCTTGAAATTCGCCTTTTTATTCGTAGATAGAAATATTTACTCTGTTCATCATGAGATTATATTAAAACAATGAAAAATCACAAAAATCTAATACTTATTCTATTTCTTTAATAAAATAGTTAGTGCATTAAAAAAACTTAGTGTTATTTTGGAAAATTTTTCACATGTGAAAATAAATATTTCTAAATAATCATTAGAGTTAAAAAAGGAACCAAGACGAAGACTCAAACGTCTAATAAATAACCCTCTTTTTATACTTAAAACATAAAAAAATAAGAAATGGAGTGATGAAAGTGGAAGAAACAGTGCAAAATAATCCAACTCAAACAGCTAAGCCATCATTGTTTGGAATGATTACGAACCCTGCGGAACAATTTACACGGATGAAAGAGCGACCTACCTTTATCTTAGCGTTAATTTTAGTTAGTGTGTTAACCGCT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTAGTACTCTGTTATTTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GGTTTTAGTACTCTGTAATTTTAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 4 444205-442733 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831785.1 Massilibacterium senegalense strain mt8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 444204 30 100.0 36 .............................. TTATTTTTCCTCCTTGTTTAACTTTGTATTACAAGT 444138 30 100.0 36 .............................. TAAAATTCGTTAAATGGCAGCACGTACACTTGATGA 444072 30 100.0 36 .............................. CCTTCTGTTTTTGTTTTTCAACAACCTTTTTATTAT 444006 30 100.0 36 .............................. TTTGCCATTACAACTAGTTTCTCTTTATTTAAAATA 443940 30 100.0 35 .............................. TATAGAACAACTCTCTCTTCGAACCCTTCTGCTGT 443875 30 100.0 34 .............................. AAATAGCAATCATACAATTCGTTTAACTCTTCGA 443811 30 100.0 35 .............................. TGACTCATTGTCCGCTTATTTAGAAGAAGATGAAA 443746 30 100.0 36 .............................. AATTCTCTTATAACGAATACGCACGCATACCGCCAA 443680 30 100.0 36 .............................. TCCATGTAATACCATGTTTTCTTATTTTTATTCCTA 443614 30 100.0 35 .............................. TCCTATTAAAACTTTTGTTCATATGTTCTATTGTA 443549 30 100.0 35 .............................. TTTCCATGGTGTTACTGGTGGCTTTAAGTGTGAAT 443484 30 100.0 35 .............................. TAATTTTCGGCAAACCATGAACAATCTCTGTTTTT 443419 30 100.0 34 .............................. ACAATGCTGACGTGGAACTTATAGCTGCGGAATT 443355 30 100.0 35 .............................. AAGATAATTCTTTTTGAAAAACTGCTAGCTTATTA 443290 30 100.0 37 .............................. AGATTCAACTTATAAAGGAAAATCGTATCGCGACACA 443223 30 100.0 33 .............................. ATTAATGTATCATCATTGTAATTATTGATTTTA 443160 30 100.0 36 .............................. ATGGATTGGCCGTATTTACGTTCTTTAATAATATTT 443094 30 100.0 40 .............................. TCGACAAGATTATTTGGATATTTTAAAGCAGTTTTAACAG 443024 30 100.0 35 .............................. TGGGTAAAGGCAAAAAAAAATACTGGGCTTCAAGA 442959 30 100.0 36 .............................. TTCGTAAAGTAAGTACCTGCCGTTTCCCGTGAATCA 442893 30 100.0 36 .............................. TCAACTGGTCGTGGAGAAAAATCGTGGGGGTGATTT 442827 30 100.0 36 .............................. TGTAGTTGCAATCTAATCTCGACAGCAGATTGATTA 442761 29 93.3 0 .........................-...T | ========== ====== ====== ====== ============================== ======================================== ================== 23 30 99.7 36 GTTGAACCAAAACATTAGATGTATTTAAAC # Left flank : GGTATTTAAAGTGTGTAAGAAATATTTAGTCCATTATCAAAACTCTGTTTTTAGAGGAAATATTACGCCATCTAATATTTTAAAAATGCGTAAGGAAATCGAAAAAATTATTGATGATGAATATGATTTTGTATCAATCATCACAATGATGAACGAATTTTCATTTGAGGAAATAACGTTAGGCACTTCTTTAAAAGAAGAAGGAGAGTCCCTATTTTTATAAAGAAGTCTTTCATCAGTGGGGGGGTTTTTGCACCCTCTAACTTAACTGCCACCTTAACATTTTGAAGTGGGGATTTTACTGCTCGTTAATAGGGGATAAATTTTCTCCAACCGTTCATGGTTTAAAAGTATTTAAAAACATTGTTAAATCAACATTTTTAAAGAGAAAATACAAAAACTCTGTTTATTTAAAAGAGGTTGGAGAAAAAACGTCCAAAGCATTGATATAAAGCCATTTTTGTTATATTATTGATATAGGAAACCTTTGTTTGATCGGT # Right flank : TATTACCGTAAAATAGATAGAAAGCCTTTTTGATTTTTATTTTCCTAAATCTTTTATGTATAGGAGACCCTATATATCCCTCGTTACTGGGCAGTAAGACGCACGATGATAAAAGATTCTTTTATGTGAAAATAGGGACTTAAAGACTGGTTGCTAATGATAAAAGAATATGACAGTATATAAGCATGCAAGGAATTTTTAAATATATTGGAAAAATATGAAAGGGATGAAGCCATGTCTAATTTACCGAATTGTCCAAAGTGTAATTCAGAATATACATACGAAGATGGGAATCTTTTGATTTGTCCAGAATGCGCACATGAATGGACGGTAGAATCAGAAGTTGAGAATAATGAAGAAGAGAATGTTATTAAAGACGCGAACGGGAATACTTTAACGGACGGTGACACGGTAACGATTATGAAAGATCTTAAAGTAAAAGGAAGTTCTTCTACATTAAAAATGGGAACGAAAGTGAAAAATATTCGTCTAGTAGACGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCAAAACATTAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 455373-453628 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831785.1 Massilibacterium senegalense strain mt8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 455372 30 100.0 37 .............................. ATATCCGCGAGATATGCAGTTAAATAAGCCCCAATGT 455305 30 100.0 36 .............................. GTGCTTCAGCATTCTTTGCTTCATTTGTTTTTTGTT 455239 30 100.0 38 .............................. ACAATTACCAAAGCACGTCCTTCTTTCCCAAAACTACC 455171 30 100.0 36 .............................. ACAAACCAATCGTGCGGGATTGACTTTCTACCGCCC 455105 30 100.0 37 .............................. ACAATTGATTCAATTGTCTTAGCAACGTGTTTATCTA 455038 30 100.0 35 .............................. TTGCGAAGGATTGAGAAAGAGGCGTATGAGACGCT 454973 30 100.0 35 .............................. GCGAATACATCATTTCGTACACAGATCAATACAAA 454908 30 100.0 35 .............................. AATGCGACTAACATTTTTTATCACCTCAATCGTGT 454843 30 100.0 36 .............................. AAAAGTATCGGCTCGTTCCAGTCCATCACTTTACAA 454777 30 100.0 35 .............................. TTCGCCATTTCGCTAAGTTCCACGTATAAAGCTAC 454712 30 100.0 37 .............................. TTTGTTAGAAAAAAGGCCTAATAAATATATGACACCA 454645 30 100.0 36 .............................. GATGCCTGTGCTGCGTCAAATCCATTGGCACCCATT 454579 30 100.0 36 .............................. GAAAAATACAGCAGAATACCGAAATCAGATTAAAGA 454513 30 100.0 35 .............................. TAGTTCTGCACCAGTTGCAAACAGAACAGTATCTA 454448 30 100.0 36 .............................. TCATGTCACTTGTTAGTGGCTTAATATCGAAAATTG 454382 30 100.0 36 .............................. TAAGAATTATGATGATGCAGGAATTTTATTAAACAA 454316 30 100.0 36 .............................. CTTATACTATCATCCTTGTTTTTTCCACGTACACGT 454250 30 100.0 36 .............................. GTTGATATACAATAAGAGTAACAAATCAAACGGAGG 454184 30 100.0 37 .............................. GTATAAAGATGTGCTAACTGAAACTCACAGTTGACAA 454117 30 100.0 36 .............................. TTCGGTACGCTCGGCCATAAACTAACTCTTGGGCAG 454051 30 100.0 35 .............................. CCTTCTTTTTCGGTAACTACTTCCTTAATGAAGAT 453986 30 100.0 36 .............................. GAAGGAGAAAAGGAAGATGGTTTTGTTCTAACAGAG 453920 30 100.0 35 .............................. AAAGAAGAGTCCCCTTTTCAATCAAAAGAAATGAA 453855 30 100.0 36 .............................. TCATGTCACTTGTTAGTGGCTTAATATCGAAAATTG 453789 30 100.0 36 .............................. TTCAGTTTATTTATAAAGTATTGCTTTGAATATAAC 453723 30 100.0 36 .............................. AAACTTACTTGCTCTTTTCCTTGCGTTTACGCTTTT 453657 30 86.7 0 ...............GG..........GT. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 99.5 36 GTTGAACCGTAACATTAGATGTATTTAAAT # Left flank : CTTTGGATCAGGAACAACAATTGACTGGAAACATGGCTTATTATTAATTGCTGGAGCGCTTATTGGTTCACCGATTGGGTCAAAGCAATTAAAACGATTTAAAAACCATGAAGTCAAACAAGTACTTGCTTATTTTTATATTGTGATTGCTACAAGTGTATTTCTAAAATTAATTCACTTGGCGGTGCTGTCGATTGGATTAATTATTACGACAGTCGTTCTCTTTTTTAGTTGGATGGTTTATAAACAAGTGAATGTGAAAAGTGTTTCATAGGCTTTGGAAAATATGTGTTTTATTGTAGATAAAAATCATAATATTTTATTTTTTCTCCAAGTGGATATATGTTAAAAATAGTTATAAACGTTGTTAAATCAATGAAAATGAGCGGAAAAATAAAAAAAATGAAAATTAGTCGCGAGGTTGGAGAATTTTAGACGAAATGTTGAATTTAAGCCGTTTTTGAGGTATTATCAAATTATAAAAGTCTTTATTTATCGGC # Right flank : TCATAAAAGTATGCTATAATGTCCATGAAACCCTAACAAGTAACGGAGTATGTTACATTCAAATTCTATTTGAAAAAGTGTATTTAAAAAGGTTCATGGTTTTAAAATAAAACCTTCCTTAATTTTAAACCGTAACACATTGTGTACATGGATTTGCTAAACAGATTCTATTAAACAAATTTTTAAAGGCAAGAATGCAGGAATATTGTTTGATTAACATTCCTGCATTTTTTTGTTGTATATTCTTTCGTTATTTTAATTCTTTACATAACATTTTGATATCAAAGTTAATGGTTTAAAATAAAAAATGTTGTTTTTTTATTTAAATAGGGTATAGTTATTAATAGGAATTATTTATCAAAAAAGGAAGTGGGACTTAAATTGGATTTTTCTGAATTAATCGTTACTGTAATGTTAAAAGAAGACATTCCATTTCAACATTCACAAGAGGTAATCGGCAACTTTTTAAATGCATCGATGTTGCATGATGCAGATTTAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCGTAACATTAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //