Array 1 25249-25416 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLTQ01000012.1 Prevotella pallens strain DSM 18710 Ga0131133_112, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ===================================================== ================== 25249 22 100.0 49 ...................... GTGCTTAATAATTCTTGCGCAGTGAGTATAGATTTGCGGTCGCAAAGTC 25320 22 100.0 53 ...................... ATACTTAATAATCGTGTTAATGATATGAAAGCGGGTTTGAAACTCGCTAAGTC 25395 22 100.0 0 ...................... | ========== ====== ====== ====== ====================== ===================================================== ================== 3 22 100.0 52 TTAATCCTTGTTGTAATGGAAT # Left flank : CCAGAGCATCTGTTTCGGTTTTTAGTTTTTCTTCTAAAAAGAGCACACCTTCTTTTCCACGCTTTAGAAATCCGTTCCCTAAAATTCGTTTCAAATCAGCATTCTTCGAATCTTTAAAATAGCAATAATGGCGTTCCATACCTAATGCAGAACCATCTTTCAATAACATATTCAGAAAGTTATTGTGTACCGTAAAACTATCTGTAGCTAAAGCCTCCTTATAATAAGAGGAAACATCGTTATCGTTCATAATCAATTTAATACTATTTTAAAATATAAATAATCTGTTTATCGTAGTCGTACGCCCATTCGTAATTAGCTATTCAGCATTAATAGTTTAACATTAAACCTTCTTCCAGTCCAGTTTCTAAATGGTGCCAACAAAGCTCTAAACCAAATTGTCTTAACATAAAACTAAAAATAACAGAATATATTGTGCCTTAAGCATTTATTGTATGCCATATTTAATAAAAAGCTTAAATCATTAAGCACCGAAAATA # Right flank : TATACTTAATAATTATATTTTCTCCAATAACTGATAGTAACTCATAACGCTTTTCTTTCCAAATTCTCTATAGATTTGGCTTTAACATCTCCTATAATGGCTTGATAACAGGCAATTTGTCATTATTGAAGTCAAACTTAAAGACTTTATTATCTGTCAGCGACTTCTGATAAAAGAATTTAGGATATCTCGATGATCCACTTTGAACACCAACGCCTATTGTTGAATCTTTCTTTAGTTTATTCCTTATGGCATTAAATAATCTTTTAATCCCTTCTTTAGGTTCTTTAGAAATCAACCGCAATGAAATCAACTCAACTTCGTTTTCATTTGCCCTTCCTCCTATTCCTTCAATAGTTCCCTTGCATACTTCATCATCATAAAAAGAAATACCTGCTTTGTTGTAATCTTTTAAAGAGACAAAGAAAAACAACTTGTCCTCTATACCATTGCCAATAACACTTCTATAATTTGCCATATTGATTGCTGTACAAAAAACA # Questionable array : NO Score: 4.55 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.25, 7:-0.60, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAATCCTTGTTGTAATGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.73%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 26568-26315 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLTQ01000012.1 Prevotella pallens strain DSM 18710 Ga0131133_112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 26567 37 100.0 36 ..................................... AACCAAAAGTTCATTCTTGTTCTTTTCATTTCTGTA 26494 37 100.0 33 ..................................... TGTTAGTTGCTGACTAAGAGTTTGCTGCTCTGC 26424 37 100.0 35 ..................................... TTCGTAAGCCATTCAGCTGCTTTTCGCAAGCTGTC 26352 37 83.8 0 ..C............................GGGAG. | T [26317] ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 96.0 35 ATTATTAAGTATATTCCATTACAACAAGGATTAAGAC # Left flank : AGACGTGAAATATATTCCTACGATTATCTTTCGCCCCTTACCGCTTGGAATAGCAAGAAGCAAAGAAGATTGTAAATAAAAGATAGCCGTTAAGCTACCTTTTATTTATGTCCTATTGGTTGGGTTCTATGAAAGCAAGCTCGAGTTTTGCAAACGTTCTATCCAGGTATCTTGCAAAGGTGCAACTCTTTCCAGTGTATTTGAGATGATAAACATCAAAACTATCAGCAGGAAATTGTATCGTAAAATCTCCCATCCTCATAACTTCAGTAAAATCTTTCTTCTTTGCGGTAAAGTTTGCCGAATTGTTTCCCTCAATAGTGAAGTTAAGTGTTATACTTCTTTCATTTACTTTAAGAGTAATATTAGCGTACTGCACGCCATCACGCAATCTATCATTGTTGGCTATATAGTCTTTCAGTGGATAATATCTATTGATGGTATCTAAAAACTCTCTCCCATACGGGCACCTCACGCCTTTAAAGCATCTTTTCCATTTA # Right flank : AGGAACTCGACAGTTTCGGTAGAAAGAGAAGGAAGGACAACAATAATTCCTCCTTCATTCCGTTTAAGTATCAAGGTCAGTATGAGGACGTTGAGACGGGACTGTATTATAACCGTTTCCACTACTATGACTCTTGTGCAGGTAATTACATTAGTCAGAATCCAATTTGGTTATCGGGGGAGATAATTTATATTCTTATGTATAAAATCTAACAATATGTATAGATACGTTTGTATTATCTGGGCAAAGATGGATGGGAAAACAAAAAATAGACACTCATTAATTGCTTATGTCTTATATAAATGTTATTATGCCTTTGGTTGAGTTTGTGCCATATATTAACGATATGGTAGTTAGGTATGATTGTGTTGTATATTTTAGGAAAAAGAACACAAAAGATGTTTTTTGTACAGCAATCAATATGGCAAATTATAGAAGTGTTATTGGCAATGGTATAGAGGACAAGTTGTTTTTCTTTGTCTCTTTAAAAGATTACAACA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATTAAGTATATTCCATTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 906-1792 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLTQ01000047.1 Prevotella pallens strain DSM 18710 Ga0131133_147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 906 36 94.4 30 ......................A........A.... CATTTTTATTCTCAAAAACGAAATGGTCTA 972 36 94.4 30 ......................A........A.... CATTTTTATTCTCAAAAACGAAATGGTCTA 1038 36 94.4 30 ......................A........A.... CATTTTTATTCTCAAAAACGAAATGGTCTA 1104 36 94.4 30 ......................A........A.... ATAAAGTTAAAAAGAATGAAGTTTATTATA 1170 36 97.2 29 ......................A............. ACAATGTAAGTTTATAAAACTCTTAAGAG 1235 36 100.0 29 .................................... ACAATGTAAGTTTATAAAACTCTTAAGAG 1300 36 100.0 29 .................................... ACAATGTAAGTTTATAAAACTCTTAAGAG 1365 36 100.0 29 .................................... ACAATGTAAGTTTATAAAACTCTTAAGAG 1430 36 100.0 29 .................................... ACAATGTAAGTTTATAAAACTCTTAAGAG 1495 36 97.2 30 ..............G..................... TTAAAAAATTAAAAAAATGGGAATAACAAA 1561 36 97.2 30 ..............G..................... CAAAAAGACAACTAAAAAAAAGTGTTGAAA 1627 36 97.2 29 ..............G..................... TAACTAAAGTACTTGAATAATTTACTATA 1692 36 97.2 29 ..............G..................... AGTTAAACAAATAAAAAATTTTAATTATG 1757 36 94.4 0 ..............G..................C.. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 97.0 30 GTTGTTTTTACCTTTCAAACAGCAGGCAGATGCAAC # Left flank : AAAGGAGAGAAAGCATTTTCAAAACTCTCCCAATTAATCTTATTACTAAGTTGGAAAAGGGGATGTTGATGACTAAGCATGTCCTCTAAAGAAGAGAACATAGAGAGCTGTTTGGATGTACGTTTAAGCATAAATATCTGCAAGAATTATAGTGTAAAGGTACAAAAACTTGCAGATATTTGCAAATAATTTATAGCATAATATACTATGAATCAGAGGAATATTAGGTTTATAAGGGTAGACTAAATAGCAGCGCAAGAATGCCTATTTTACGACACAAAACTGCCTCTTTTGAATTTCAAAAGAGGCGGTTTTGTATTATGTATATTCTGTACTTTCTCATGAAAAAACAGATTTCACAATAAACTGATAACGAAATAATTATCAACAGTTTTGCTTGTGAAAACTATTTCCACTTTTCTTGCCTTTTTCTCTCCTTAAAAGACATGTTTCCCAATTTATTTTTACCCTCCACATTCTGTACACTTACTTGTTAATAA # Right flank : CGCACCTAACCTAACTGTTTGATTCTTATATGTTTTGTTTCTTTCTTTTCCACCAGTATTTTTTTCCTTTCTTATTATGGTTATATAAATTTCGTTGTTGTAAATCTATATCTTTTCTGATTTGTATTGAGAGGCTCTGGTTAATTTCTATCATTTCCTTTACAACCTCTCGATTATGTATCATTATCTTCTCATCAGGGTTGTTCTTTTCAGCAAGCAAAAGTTTATGAACAAGGGTTCTATATTTAAATATCAGCGACATAACCTCTTTTGATAGATAGATGCCATTGCCTTTGTTGTATACCTCTTCGGTTAGCTCTTTGAAGAATTGGCGTATATTGGCTTGTCTGAAGTAATAAGTTTTCTCTCCGCCATCCTTAGGCTGTTCCCACACCAGTATGCAGTCGTCATTTTCTGTGTCTGTGGTAAACCTAAGCAATTTATAAATGCTTTGGTGTGCCTTCAGTATAGCTTCATAGTGCGCACGTTTAATGTTCTCA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTTTACCTTTCAAACAGCAGGCAGATGCAAC # Alternate repeat : GTTGTTTTTACCTTTCAAACAGAAGGCAGATACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //