Array 1 228-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXF01000037.1 Neisseria meningitidis strain NM1779, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 227 36 91.7 30 ....T...G...A....................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTA 161 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 95 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 29 29 77.8 0 ....T........................------- | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 92.4 30 GTTGAAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : G # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 1009-1770 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXF01000037.1 Neisseria meningitidis strain NM1779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1009 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 1075 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 1141 36 100.0 30 .................................... TATAACAACCATTTTGTTATTTCGATTTTT 1207 36 97.2 30 T................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 1273 36 100.0 30 .................................... TAAACCAACCGGGTATTCATACACAGCCAA 1339 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 1405 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 1471 36 100.0 30 .................................... TGTATTCGTCGATGATGGAAACTCGAGCAT 1537 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 1603 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 1669 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 1735 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GTTAATCACACAGGCGAGAGCCGAACAAAAATCCCCGTTGCAGCGGGGATTTTTGCTGTTCCCTGTTTGATGATTAAACTAAAATCTTGCAAAATGAGACCTTTGCAAAATTCCCCAAAATCCCCTAAATTCCCACCAAGACATTTAGGGGATTTCTCATGAGCACCTTCTTTCAACAAACCGCCCAAGCCATGATTGCCAGACACATCGACCGTTTCCCGCTATTGAAGTTGGACCAGGTGATTGATTGGCAACCGATCGAACAATACCTGAACCGTCAAAGAACCCGTTACCTTCGAGACCACCGCGGCCGTCCCGCCTACCCGCTGTTGTCCATGTTCAAAGCCGTTCTGCTCGGACAATGGCACAGCCTCTCCGATCCCGAACTCGAACACAGCCTCATCACCCGCATCGATTTCAACCTGTTTTGCCGTTTTGACGAACTGAGCATCCCCGATTACAGCACCTTATGCCGCTACCGCAACTGGCTGGCGCAAGAN # Right flank : TTCTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //