Array 1 395-1 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAAIWE010000214.1 Escherichia coli strain EC6 STEC6_S6_trimmed_contig_214, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
       394	    29	 100.0	    32	.............................	GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT	
       333	    29	  96.6	    32	............................T	GTGTTTGCGGCATTAACGCTCACCAGCATTTC	
       272	    29	 100.0	    32	.............................	ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA	
       211	    29	 100.0	    32	.............................	AGCAGATACACGGCTTTGTATTCCGTGCGCCC	
       150	    29	 100.0	    32	.............................	AATAGCAATAGTCCATAGATTTGCGAAAACAG	
        89	    29	 100.0	    32	.............................	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC	
        28	    28	  93.1	     0	.A..........................-	|                               	
==========	======	======	======	=============================	================================	==================
         7	    29	  98.5	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   |
# Right flank :  C

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 1 39-250 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAAIWE010000010.1 Escherichia coli strain EC6 STEC6_S6_trimmed_contig_10, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
        39	    29	 100.0	    32	.............................	GTCATCACGATGAATCAAAATTTCGCCCGGCT	
       100	    29	 100.0	    32	.............................	AATCTATTGTGAATTTGAAATGGTCCAGCACT	
       161	    29	 100.0	    32	.............................	GGTAAAAACACGGTCTGAACCGACATTCATGT	
       222	    29	  96.6	     0	............T................	|                               	
==========	======	======	======	=============================	================================	==================
         4	    29	  99.2	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   TAAGTTAGCGCTTATGGGGTTTTTCCCCACCGTTCAGGG
# Right flank :  GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC

# Questionable array : NO	 Score: 5.82
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//