Array 1 15175-15023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBO01000045.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3927 contig45.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 15174 30 93.3 31 ...T.........................G CGACCGCGCGCGATTTCGCCGGCGGGGACAA 15113 30 96.7 31 .............................T TGAACGTCATTTCAGACGAACTGATCACCTT 15052 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 96.7 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CGCCGCACAGACTCCGGCCCCGGCAAAGGTGTCGGCCCCGCACGGCCGGGCCGCCGTGTATGCGGCAGGAGCAGCGAAAGTCCGGGCAGCTTTGGCTACCTGAGCCACCGGATATCCGGTGTATCGGGGAACTGACGAGCCCGGCCGTGGTCCCGAGCCGGCCGACGGCACTGAGTCCGGTCGACTGTGGTGCCCGCGCAGCGGGGATGGGCTTCAGATGTGGGCTGTACCGCAGCCGAACGCGCAGTGGTCCCGCGAAGCGGGGCCCGGAGCAATGCCGACGTACGGAGCGGGCCGGATACGGTTCCCGAGCCGGCCGGCTGGCTCCCTGGCCGCGGGCTGCCCCGCTGGTGACGCGTGCCTGCTGTCGCCTGCAAAGGAGTAGCGTGATCGGGGCACCGTACTGCCGTCTCAAAGGAACCCTGCAGGTGGAAATGTCGGAGTCTTCGAAATTATGCAAAATCCCGCACCACGCCGAGTGAAACCGCTGGTCGTGCCCT # Right flank : GCAGGTCAGCGGTGTTCTGGTGGCGAGTGAGGCCGATGTGGCAGAGCCCGACGTTGCGGCAACCCTTCACACTGATCACCCTCACCTGGTTACTCCCGTTGTTTCGGTACAGCTCTCTTGTCGTTTTCCGGCGAAGGCCGTGGGGCTGAGGGCCGTCGGCCGAAGCGCGCGTGCCCGGGCGAGGACCAGTCCGCCGACAGCGAAAGCGCCGCTGCCCCGACCGGATCGCTGGTGGCTGAGGGCGGCCCGCTGCGCGGGGAAAAGCAGGAAGAGTCCCCGGCGGGTGAAGGTGAGAACGGCGGCCGCAGGCCGGTGGCCGATGCTCCGGTGCGGGTCCTGGGCGGCAAGGGTCAGGACAGGCAGCAGCGGGGGAGGGTGCCGCTGCCGCCGGAGGATCTGCGGGCCGTCCTGGCGCCGGTCGACCTGGTGTGGGCCCGGCTGGAGCGTCCGGCCGCCCGCCGCCTGGTGGAATCCGCCGTCCGCAGCGAACTCAAGCGGGT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 112777-114880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBO01000019.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3927 contig19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112777 29 100.0 32 ............................. ATTTCCTCGTGGGCCCGCCGGTTCTTTTCCAC 112838 29 100.0 32 ............................. GCGCCAACCACGCCTTCGACCCCGACAGGTTC 112899 29 100.0 32 ............................. TCGCCCGCGACGCCCTTGACGATCCAATCGCC 112960 29 100.0 32 ............................. GATGCTCCAATCGCCCAGGGTGTTTCTCCTGT 113021 29 96.6 32 .....................A....... CGCAGGGCGGTGCGCTTGTCGGCCAGGGCCGG 113082 29 100.0 32 ............................. GGCGGCATCGACCGCAACGGTACCGAGGTTCG 113143 29 96.6 32 ............................T CTGCCGGAGCAGGTTGACCAGCCCGTTGTCCT 113204 29 100.0 32 ............................. GCCGGCGCGGAGCACATGCTGGTGTCGATGCT 113265 29 100.0 32 ............................. CACGGATACATCGCGACCGAGGCGCAGATCAA 113326 29 100.0 32 ............................. GCGTGGCTGATGGGCGGCCCGGCCCTCGCCCT 113387 29 100.0 32 ............................. CCGCGGGTGCAACATGCACACCGGCCGGTGTT 113448 29 100.0 32 ............................. TGGTATTCCACAGGGGTGCGTTGAGCTGTCGT 113509 29 100.0 32 ............................. GCCGAGTTCGACCGGTCCGTAGTCCTCCGCGA 113570 29 100.0 32 ............................. GGCCCGGTCCTGGAGTTGGGCGAGTGCCCGAC 113631 29 100.0 32 ............................. GACGAGCCGAGCCAGGAGACCGTCTGGGAGGG 113692 29 100.0 32 ............................. TCGCCGGTCGCGCAGTTGCGGGCGGCTCGTTC 113753 29 100.0 32 ............................. AAGGAGCGGGTGGTCGCCATCGCCCGTGCGGT 113814 29 100.0 32 ............................. AAGGAGCGGGTGGTCGCCATCGCCCGTGCGGT 113875 29 100.0 32 ............................. GGCCGTTACACGAAGGTGCCGGCGCCGCCCGG 113936 29 100.0 32 ............................. CCGCGTACGGCCGATGGCCCGCAGCTCACCGA 113997 29 100.0 32 ............................. GCGGTGTCCTGGTTCATCGGGTCACCGACCCG 114058 29 100.0 32 ............................. CGGTCGCTGCTGCTGGCAGTGATCTGCTGTCC 114119 29 96.6 33 ...T......................... ATTTCCGGCCGGATGAGTGATGGCGCAAAACGT 114181 29 96.6 32 ...T......................... GAGATCGACGCCATGCGCGAGCGCCGTGGCGC 114242 29 96.6 32 ...T......................... TGTAGACGCAGGGGCTCGGCCAGTGCCCCCTC 114303 29 96.6 32 ...T......................... CCCGTTGGTTCTCTCCTTGGCCACCGGCTGGT 114364 29 93.1 32 ...T.................A....... CAGGTACACGCCGGAACCCACACGCTCACCTC 114425 29 93.1 32 ...T..........C.............. GCGATGCGCCTGTACGACGCGAACGGCAACCT 114486 29 100.0 32 ............................. CTCGGTAGAGGGGGCAAGCCGCCGCAGCGGCC 114547 28 96.6 32 .................-........... AGGGCTTCAAGAACGGCAAGCCCAACTACATT 114607 29 100.0 33 ............................. CCCGGACCAGGCGGCGGTCGCGGGCCTGGCAGC 114669 29 96.6 32 .............G............... TCGTTGCCGTACCGGTCCTTGCGGGTCACGGT 114730 29 100.0 32 ............................. CCTCAACCGAGGGACCGATGTGGATCTCGCCG 114791 29 93.1 32 ..............C..........C... ACCGCAGGTCAGGGGACTACAGGGGAGGTACT 114852 29 96.6 0 ...T......................... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.5 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CGCAGCACCGCCTGGCTCGCCGCACAGGCCCCGGCTCCGGCGGAGGAGAAGGCTCTTCGGGGCCGGGCCGCCGTGTATGCGGCGGGAGCAGCGAAAGTCCGGGCGGCTCTGGCTACCTGAGCCACCGGATATCCGGTGTATCGGGGAACTGACGAGCCCGGCCGACGGCACTGAGTCCGGCCGACTGTGGTGCCCGCGCAGCGGGGATGGGCTTCAGATGTGGGCCTGTACCGCAGCCGAACGCGCAGTGGTCCCGCGAAGCGGGGCCCGGAGGCAATGCCGACGTACGGAGCGGGCCGGATCGGTTCCCGAGCCGGCCGGCTGGTTCCCCGGCCACAGTTGCCCCGTCGGCGACGCGTGCCTGCTATCGCCTGCAAAGGAGTAGCGTGATCGGGACACCGTACTGCCGTCTCAAAGGAACCCTTCAGGTGGAAATGTCGGAGTCTTCGAAACTAAGCAAAATCCCGCACCACGCCGGGTGAAACCGCTGGTCGCGCCCT # Right flank : CGACGCAGCAGGGTCCTCGGCCTGGAGGAGCTTGTGGTTCCCGCGCATGCGGACGCGCACGACTCATGGCCCGAGACGGCCACGCCCTCTCCACCACCCGGATCACCGCCCTGGCCTGCGGTTACCACCGCACCTTCGCCATGCTCGCCGCCCACGCGCCCGTCCTGACCATCGACACCACTACCAGATCCTCCGGCCCGGCCGGATGACAGACACCCGACTTCCAGCGCCCGCACCACGGCCATCACTAAGCTCCGGCGGCACCAGCACCCCACCGTGCCCCGGAGGAACCGGGGGTCCAACCCCGCACGCGCGGGGACCACGATCTACGCGGGCGTGAACTACGCGATCTCGCGGGGACAACCCCGCACGCGCGGAGAGCACCTCCTACCGGACGGAGGGGCGGGTGTCTGCTGTTTTCCCTATCCCCCGCTCCGGGCTGTGTGCGCTGCGTTACGTTCGTGCCACGTACGCCAGGAGGTCTCGATGAGCGTCGGCCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116515-117152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBO01000019.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3927 contig19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116515 29 100.0 32 ............................. GCCGGTGGGCAGATCGTCCGTTCCGATCGTGA 116576 29 100.0 32 ............................. GGACCTCTGGGCGGGACGGCGTCCTCTGTGGT 116637 29 100.0 32 ............................. CCGGCCGGAGAGTGCCCACATCTTGACGGTGT 116698 29 100.0 31 ............................. GCCCGCACCCGCCGGAGCCGGACCCGCTCCC 116758 29 96.6 32 ............................G CGGTGATGGCGCGCGCCGCGGCGAGCACGAAC 116819 29 96.6 32 ...G......................... TTCGTCTACGCGCCGGGCGTCAAGGTCTACAT 116880 29 96.6 32 ............................T TGCCTCCACAACATCTGGTCCAGCGACTATGT 116941 29 96.6 32 .....................G....... CACCCCTGGTCCCACTTCGTGGGGTACTCGCC 117002 29 86.2 32 ...G..........T......G...C... AGGGCGCGCCGGTCCTGCAGCAGTCGTGCGAG 117063 29 89.7 32 ..............T......G...C... GATCTTGCGGATCGTCACCGTAGAGAGTCCTA 117124 29 89.7 0 ..............T......G...C... | Deletion [117177] ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.6 32 GTGTTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCGGCCGCGGGTCACCTCCGCTCGCACGGGAAGCACGCCTTGGGATGGGCCATGCATGTGTCGCGCAGCGGTTCACCTCCGCTCGCACGGAGAGCACACGGAGCCGTTGCCCGGGTCGTCCTTGCCGCCCGGCTCCCCTCCGCCTGCGCGGAGAGCACCCCTTCGCGACCTGGGGTGTCAGAAGGGCTTTGCCGTTTCGTGATGTGGGGCGCCGCCGGTGTCATCGGTTCCGAGCGCGTGGCCGGGTTTCTGGCCGAGCGGCTGACGCGGCGTCTGTGCGGTCCAGCGTGGCGGGCCGGATGCGGTTCCCGAGCCGGCTGGCTGGCTCCCTGGCCGCGGGCTGCCCCGCCGACGACGCGTGCCTGCTGTCGCATGCAAGGAGTAGCGTGATCGGGGCACCATACTGCCGTCTCGAAGGATCCCTTCAGGTGGAAATGCCGGAGTCTTCGAAACTAAGCAAAATCCCGCACCACGCAGGGTGAAACCGCTGGTCGCGCCCT # Right flank : CATCAACCTCCTGGTGCACCGCGCACGGTTCACCTCCGCTCACGCGGGGAGCGCCCCTTCGCGACCTGCAGCGTTGAAGGGCTTTGCCGTTTCGTGTTGTGAGGACCGGTGGCGCATGGGTGCAAGGTACCGGCCGTTGGCGGCAGGTGCCGGTGCAGAGCGGGATTCGTGACCGGTACGTGCCGGCTATGGGAACGATGGTTGGGAGCCCGGGGCGGCGCTCGGCCTCAGCGACGTGCGATTCGCCGTTTTGGAGGTGGCTGCGTGACCGCGCACCGATTCACATACCCCGAAGCCGCGAAGGTGCTGCGCGTCGAAGAGCGGTGGCTGCGACGCAACCTCAGCAAGCTGCCGCACAGCCGCAAGGGCAAGGTGGTGACCTTCAGCGAAGACGATCTCGACCGCATTGACGCGATTCACCACCACGAGCCCATGGTGGGACCACTCGCAACTGGCCCGTCGACTCCACCGTCCAGCACGACTCCGCTGTCAGCGCTCAA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : GTGTTCCCCGCGCATGCGGGGGTGGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 120131-121137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBO01000019.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3927 contig19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 120131 30 100.0 31 .............................. CACGTGTTGGCAGGTGCCTCTCCTGTCACGG 120192 30 96.7 31 ............................A. TACCGGAAGCTGTGGGAGTTCGGCAGCGAGT 120253 30 96.7 31 .............................T GGACCAGCTCAAGGCCTCCGCCCTGGACGTA 120314 30 96.7 31 .............................G CTCCGCTGGGCTCGTGGCAGATCGGCGACGA 120375 30 100.0 31 .............................. GATCCTCGCCGTTGCCTGCGTCGCCGGCCAC 120436 30 96.7 31 .............................G CGCGGTGGATCATGCGCCGCATCGTCTCGAA 120497 30 96.7 31 .............................A TCAGCGCCAGTTCCTTCCGCGACAGCGCCAG 120558 30 96.7 31 .............................G ACATCGCGTTCGCCGAGGAGACGCTGCGCAA 120619 30 96.7 31 .............................A GCACCACGTGATACGGGGGAACCTTGGACGC 120680 30 100.0 32 .............................. ATGCGGGCCAGCCTGGACACCCGCCGCACACG 120742 30 96.7 31 ..............T............... GGCAGAAGAAGAGGAGCACCACCATCATGAA 120803 30 93.3 31 ...........A.................T GGCCGACTGGGAGCAGGCGGACTTGCGGGAC 120864 30 93.3 31 ........T..A.................. GGTCCGGGTGGGCGACCAGGGCGGCAAGGCA 120925 30 96.7 31 .............................A CGATGCCGCCGCCCGTATCGCCTACCGCGAC 120986 30 96.7 31 .......................C...... AGGTCCTGGGTCGCGGCGTGGGCGGCCGGGT 121047 30 90.0 31 ..............T...A..........T CTTCCGAGGGCAGCAGCTCGCCGCCGGCCGC 121108 30 80.0 0 ..............T...A...CA.G...T | ========== ====== ====== ====== ============================== ================================ ================== 17 30 95.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : ACCGGTGAGTCATCGGCTCACCTCCGCCTGCGCGGAGAGCACTTTTCGCGACCTGTGGCGCTAGAGGAGCTTTAGCGTTTCGTGATACGCGGATTGGTGGTGCATGGGTGCAATGTGCCGGGCGCCGACGGCCGACTCCGGCTCGGTGGCGGTGCTTCCCGGTCGGCGGTCGATCTACTGCGAATGCGGCCCTGGTGCACCGGCTTACCTCCGTTGGCGCGGAGAGCACGCAGCGGCAGGGAATGACGCGTCGCCCCGGGGTTCTGGCGGAGTGGCTGACGCAGCGTCTGACGGCCCAGGGCGGCGGGCTCGTGCGGCCGGCAGGCTGCTCGGCCGCGAGCTGCCCCGGCGACGACGCGTGCCTGCTGTCGCCTGCAAGGAGTAACGTGATCGGGTCACCATACTACCGACCTAAATGAACCCTTCAGGTGGAAATGTCGGAGTTCTCGCAAGTAAGTAAAACCCCGCACCCCGCCGGGTAAAACCACTGGTCGTGCCCT # Right flank : TGTTTCGCGCCGTCGCGGTGCGTGTCACTCTTCCGTGTCGGCTCACCCCCGCTCGCGCGGAGAGCACGTCGCAGCGCGTCCCGCCATGGGCCAGACCACCGGCTCACCTCCGCTCGCGCGGAGATCTCTCTTCGCACCCTGCGGCGTCAGGGGAGGGCTTTGCCGTTTCGTGCTGCGTTTAACCGGGCTTGCGAGGCAATGTACCCGTCACCGGCCTGCTGCGGTGCCCCGTCGTGCGGGCTGCGGGCCCGAGCCGGTGGCGCACGGACTGGCCGGGCGTTTCCCTGCGGGCGGGAGCAGCGTGTCAGCCGCTGCGAGGGGAGCGGCAAGGTGCTGTGTGTGCACCTGCGGGTGTGTACAGTTTGGGTTATGGAGGATGAGACGTATCCGCTGGTGCAGGCGCGTAATGAGCTCGGGCAGTTGGTCAGCCGGGTGCGGCACGGCCGGGCGCACATCGTGATCAGTGAGTACGGCAGGCCGGCCGCGGCGCTGGTGCCGGT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 122405-124425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBO01000019.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3927 contig19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 122405 29 100.0 32 ............................. TTCAGGCCGCCCGCGCGGAGGCCTTCAAGCCT 122466 29 100.0 32 ............................. CCGCGGGTTCGACTGCTCCAGTCTGGTGCAGT 122527 29 100.0 32 ............................. GCTTGATGTTCGCGTGATCGTTGTGGTGGACC 122588 29 100.0 32 ............................. GGGACGCCCTACTTCGACGACCCGCACGCGGC 122649 29 100.0 32 ............................. GCCCTCCGGATCCGGTGCGGCCCGCTCCCCCG 122710 29 100.0 32 ............................. GGCCCGCCACTTCCCACGTCCGCACCCGGGGC 122771 29 100.0 32 ............................. GGGATTCACACTCTCATGTCTGGCGGCCGACG 122832 29 100.0 32 ............................. TCGTCGCGGCGGTGAAGGAACATGCGCATGGA 122893 29 100.0 32 ............................. CGGGCCATGGCCGTGTGCCAGGTCCCCAGTGA 122954 29 100.0 32 ............................. CGCAGGCGCCCATCCTGGCCCTGACCAGGGGT 123015 29 100.0 32 ............................. ACCGACTGGAGTACGAGGACGGGTGCGGCAAC 123076 29 100.0 32 ............................. GCGGAGGGCCCGATCGCGTCGTACGCGCTTCC 123137 29 100.0 32 ............................. AGCGTGATCAGGCTGGCGATGGCGACGGCATC 123198 29 100.0 32 ............................. TGCCCGAACGAAGGATGTACCCCACGTAGATC 123259 29 100.0 32 ............................. CGCTTCGACCGGGTGCGGTCGTGGGCCGCCCG 123320 29 100.0 72 ............................. GGCGTAGCCGCCTACAACAGCCAGGGTGCGTAGTGGTCCCCGCGCCTGCTCGCTCGCACCGGCAGGTAGAGG 123421 29 100.0 32 ............................. GGTGAGGGAACCGCAGTTCAGCGGCGCGCCGG 123482 29 93.1 32 .G..........................G CCGTCACCGAGCAGATCTGGGCCGAGGCCTGG 123543 29 100.0 32 ............................. GCCGGTGCGCGTGCCCTTCTTCGGGGTGTGCA 123604 29 100.0 32 ............................. GAGCCGGTCGGCGGCACCGAGTCCGGCCGGCT 123665 29 100.0 32 ............................. TTGCGGCGGGCGGCGGCCTGCTGAAAGCGGAT 123726 29 100.0 32 ............................. TCCGTGCCGGTGTCGCGGTCACCGATAAGGGC 123787 29 100.0 32 ............................. CACACGAGCAGCTGCACGACGACCAGGAGCAC 123848 29 96.6 32 ............................T CTCCGTCCCCGGGGCCGGAGGCGGCGCCGCAA 123909 29 100.0 32 ............................. TTCTCGGTGGCTGCGGGTGGCATTCTCCCGGT 123970 29 100.0 32 ............................. CGATGACCCCGACCCGCCGCAGCCTCTCGGCC 124031 29 100.0 32 ............................. ACTCACGCGACGTCCGGCGGGAAGAGTGGGCC 124092 29 100.0 32 ............................. CAGCCGTCGGCCGGGTTACTCGGGTTCTGGAA 124153 29 100.0 32 ............................. CCGTTCGCCGCCGTCCTGTTGGGCGAAGGAGT 124214 29 100.0 32 ............................. GTCTGTGCGGCACCCTGCGGGCCGATCTTGCC 124275 29 100.0 32 ............................. TGCGTCGGCTGACGCCCGCGAACTCCCGGACG 124336 29 100.0 32 ............................. ATCGAATTGGCCGAGAAGTTCGACCGGCTGCT 124397 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================== ================== 33 29 99.7 33 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CGCCGCAGGCTCGCCAGCTCGGCGGTTCCGGCTACTGGCGCCTGCCGGTCGGCGACTGGCGCATCCTCTACCAGCCCGACGACCACACCGTCACCGTGCTCGTCCTCAAAGTCGGCCGCACCACCTGAACCAGCACCACCTCCAACCAAGCCGGCATGGGCCCGTCGCGTGGTGGAGAAGGTCGACCGGCCGCCGCGAGCTGTAGTACGCCGCCGGTGTCATCGGTTCCGAGCACGTGGCCAGGTTCCCGGCCGAGCGGCTGACGCGGCGTCTGGACGGTCCAGCGTGGCGGGCCGGCTGCGGTTCCCCATCCGATCGGCTGGCTCCTCGGCCGCAGGCTGCGCCGACGACGACACGATGCCTGTCGTCACCTGCAAGCAGTAGCGTGATTAGGTCACCCCCACTCCCGCCTCGAATGAGCCTTTCAGGTGAAAATGCCGGAGTCTTCGAAAGTAAGTAAAATCCCGCACCACGCCAGCTGAAACCGCTGGTCGCGCCCT # Right flank : CCGGTCGCCGAAGTAGGGAACAGCCCCGCACGCGCAGGGATCACACACGCAGCTGCGCAACGACGGCGCCCTGGTCGGGAACAGCCCCGCACGCGCGGGGACCACCCAGCTCGTCACCGTGCGGGGCCAGCATGACCGGGAACAGCCCCGCACGCGCGGGGACCACTGGGTCTGTAAGAAAGGCGAGACACAAGTCAGGGGAACAGCCCCGCACGCGCGGGGACCACGGCGTCGTCGGGGGTGGGGAGGGGGTGACCGCGGGAACAGCCCCGCACGCGCGGGGACCACCCCGGCGGGGGGTCTGTGAGTTCCCTCGTTCGGGGAACAGCCCCGCACGCGCGGGGACCACTCCGCGTAGATCACGACGTCGGAGAGGACCTGGGGAACAGCCCCGCACGCGCGGGGACCACCGTGCTCCTGGTCAGGTCCGTCATGGCGACCCGGGAACAGCCCCGCACGCGCGGGGACCACCAGGGCAGGCTACGGAAGGGGTGGGCCTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 125141-124440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBO01000019.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3927 contig19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125140 29 100.0 33 ............................. CACGACCAGGACTACGAGAACGAGGTCTACGAG 125078 29 100.0 32 ............................. TCGTGCGCATGGCCGGACTCCTCTCCGGCGGG 125017 29 100.0 32 ............................. GCGGCCTTGAGTGTTTCGACGGCGGCTTCGCA 124956 29 100.0 32 ............................. CGCGAGGCCCACCCCTTCCGTAGCCTGCCCTG 124895 29 100.0 32 ............................. GGGTCGCCATGACGGACCTGACCAGGAGCACG 124834 29 100.0 32 ............................. CAGGTCCTCTCCGACGTCGTGATCTACGCGGA 124773 29 100.0 32 ............................. CGAACGAGGGAACTCACAGACCCCCCGCCGGG 124712 29 100.0 32 ............................. GCGGTCACCCCCTCCCCACCCCCGACGACGCC 124651 29 100.0 32 ............................. CTGACTTGTGTCTCGCCTTTCTTACAGACCCA 124590 29 100.0 32 ............................. GGTCATGCTGGCCCCGCACGGTGACGAGCTGG 124529 29 100.0 32 ............................. GACCAGGGCGCCGTCGTTGCGCAGCTGCGTGT 124468 29 93.1 0 ...A....T.................... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Left flank : GGTGCTGTGGTGACCGTCATCATCCTCGCCAACTGCCCCGCCGGCCTGCGCGGCCTCCTCACCCGCTGGCTCCTGGAAATCTCCCCCGGCGTCTTCCTCGGCTCCCCCACCGCCCGCATCCGCGACCTCCTGTGGGACGAAGTCCGCCAGTACGCCAACCAAGGCCGCGCCCTCCTCGTCCACCAGACCGACACCGAACAAGGCTTCACCTTCCGCACCCACCACCACGCCTGGCACCCCACCGACCACGAAGGCCTCACCCTCCTCCACCGCCCAGCCCCCCGAACCACCCCACCGGAAACCGGTCACCCGCCCCAGCCCCCGAAACAGAACTGGAGCAAGGCCGCCCAACGCCGCAAGTATGGTCGCCGATAGCCGTCCAGCATGCTCCTGCACGAACGGATTAGCCGCCAGTACCTAAACATATGCCCGTTATGCCGGAATCTCTGGAAGTAAGTAAAAACCTCTCCCCCGCCTGACAAAGCCGCTGGTCACGACCT # Right flank : TACTTCGGCGACCGGGGACCACCCCCGCATGCGCGGGGACCACAGCAGCCGGTCGAACTTCTCGGCCAATTCGATGGGACCACCCCCGCATGCGCGGGGACCACCGTCCGGGAGTTCGCGGGCGTCAGCCGACGCAGGGACCACCCCCGCATGCGCGGGGACCACGGCAAGATCGGCCCGCAGGGTGCCGCACAGACGGGACCACCCCCGCATGCGCGGGGACCACACTCCTTCGCCCAACAGGACGGCGGCGAACGGGGGACCACCCCCGCATGCGCGGGGACCACTTCCAGAACCCGAGTAACCCGGCCGACGGCTGGGGACCACCCCCGCATGCGCGGGGACCACGGCCCACTCTTCCCGCCGGACGTCGCGTGAGTGGGACCACCCCCGCATGCGCGGGGACCACGGCCGAGAGGCTGCGGCGGGTCGGGGTCATCGGGGACCACCCCCGCATGCGCGGGGACCACACCGGGAGAATGCCACCCGCAGCCACCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 136587-137528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBO01000019.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3927 contig19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 136587 29 100.0 32 ............................. AACTCTCGATCGATTCGCCCCCTTGTCGTCGG 136648 29 100.0 32 ............................. CCGAGCCGGACGATGACGACACCGAGGACAGC 136709 29 100.0 32 ............................. TCCGGCGCCGCCCAGGCCCTGACCCAGACCGC 136770 29 100.0 32 ............................. CAGCTGCGCGTGGCCGACCCCGAGCTGGACAC 136831 29 100.0 32 ............................. GTACGACTGTTCCTGCGCGGGATCGGCGACAA 136892 29 100.0 32 ............................. CGAGCGGCTACCGAGCGGACGGTCACGAGCGG 136953 29 100.0 32 ............................. GACGGCCCGTCGCTGGCGGCCCACCTGGCCCG 137014 29 100.0 32 ............................. TGGCCGACCTGGTCCAACTCGTCCTGGCGGAC 137075 29 100.0 32 ............................. CAGGTCCCGGCGGCTTGGAGCCAGCCGGGGGC 137136 29 100.0 32 ............................. CTCTCCACCGTCGCGGAGATGACCAGTGTGGA 137197 29 100.0 32 ............................. CTCAAGCCCATCGACCTGACCGACGAGCAGGT 137258 29 100.0 31 ............................. CAGGCCGCCCGGGGGTGTCATGACGCCCGAG 137318 29 100.0 32 ............................. CAGCGCAGCACCGCCGCCGCAGCGCCCGGCCG 137379 29 93.1 32 ..........T.................A TCCTAAGGGTGTGACAGGCCGGTGCCGTACAG 137440 29 93.1 31 ..............CT............. GGGGCAAGGCCGTGGGTCAGGCCAAGGTCAC T [137467] 137501 28 82.8 0 A.............C....A...-.A... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : TGGTCGTAGCAGGCCAGGCGTTGGCCGGGTAATTCTCGGGTGGGAAGGCGGATGCCGCGAGCCAGGTCCGGTCCGAGGATGTCAGCGGTGCGGGAGGGGGCTGTGCTGCAGTCTTGAGGTGGTCCTGGCACGGTGTGGCTGCTGTGGGAGCGGTTGGGTATCTCCGGGAGTGGCCGCGTCAGGGACAAGGCCGCCCGCCGTGAGCTGCGCTATGTCGCCGTCGTCGTCGGTCGCGAATGCGCCGCTGGGTTCATGGTCGAGCGGCGACGCAGCGTCTGGCAGCGCAGCCCGGCGGGCCGGATACGGTTCCCCATCCAGTCGCTGGCTTCCTGACCGCGGGCTGCTCCGGTGATCACGTGTGCCTGTCGTCGCCTGCAAGGAGTAGCGTGATCAGGTCATTGCACTCGCGGCTCGAAGGAACCGTTCAGGTGGAAATGTCGGAGTTCTCGAAAGTAAGTAAAACCGCGCACCCCGCCGGGTGAAATTGCTGGCCGCGCCCT # Right flank : CGATCGAGAAGGCAGTAGAGCACCTGCCTGGAGGTACGACCTGCGTAGCCTGTGGCAGCTCACCTCTGCTCGCGCGGAGAGCACGGAGAGACCGCCGAGGCCCCCAGGCGGGCGCCGGTTCACCTCCTCATGCGGAGAGCACCCTTCCGACCTGCGATGTTAGAAGGGCTTTGCCGTTTCGTGGTGAGAAGGTCGTTGGCGCATGGGCGCAACCTACCGTCCCTGTACGTCGCGACGCTGCCTGCTGGCTGTCGTGGTTGCAGCTGTGAGCCGTACGCGGGAGTCGGTTCCCGGCGGGCTGGGCCATCGACGTTCGCTGTCCGCGTGGGTTCACCCCTACAGTTACAGAGCCGGGGGGTGCAGTCGTCGGTGGGCTGACGCTGCGGGGCGGGAACGTCGGATGGTGGTGTCCGTGGTGTGGGGCGCGGTGATGGTGCTGTCGGCGGGGACGGTGCGGCCGGCGAGTGTGACGCCGCTGGCGATGCGGCAGCGGGGGCCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 142978-143194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBO01000019.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3927 contig19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 142978 30 93.3 31 ...................T.........T CGCCGACCGCGGCGTTGAAGTCGGCCACGGC 143039 30 96.7 31 .............................C CGCGAGTCCGCTGGTCGCTGTACAGCGACAC 143100 30 100.0 31 .............................. CCCACCCATACGGCACCCTGACTCCCCTGCG 143161 30 90.0 0 .................A..C.A....... | T,CC,T [143177,143181,143191] ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GAGTCGACGCCCCGCTTGAGACTCGCCTCCGCCTGCGCGGAGAGCACCCTTCGCGACCTGCGGTGTTAGAGGAGCTTTGCCGTTTCGTGATACGCGGATCAGTGGTGCATGGGTGCAATGTACCGGGCGCCGACGACAAGCTCCGCCTCGGTAGCAGTGCTTCCCAGACGGCGGTCGACCTACTGCGAACGCGGCCCTGGTGCACCGGCTTACCTCCGTTGGCGCGGAGTGCATGCAGCGGCAGGGAATGACGCGCCGGGTTCTGGCGGAGTGGCTGACGCAGCGTCTGCCGGCCCAGGGCGGCGGGCTCGTGCGGCTGGCAGGCTGCTGGGCCGCGAGCTGCCCCGGCGACGATGCGTGCCTGCTGTCGCCTGCAAGGAGTAACGTGATCGGGTCACCGTACTACCGTCTCGAATGAACCCTTCAGGTGGAAATGTCGGAGTTCTCACAAGTAAGTAAAACCCCGCACCCCGCCGGGTAAAACCACTGGTCGTGCCCTA # Right flank : GACTTCAACATCCACCTCACGCTGGTCGAGCCCGGCGCCACCCGCACCGGCTTCGCTTTGGCCCTGCAATACACCACCGAAACGGCCGTCTACCGTGACAATGCCGTCGGCCAGACCCGGCACTGCCTGGAAACCGCAGGCGAGAGCGTCTTCACCGGCGACCCGGCCAAGCTCGCTGCCGCCATTTACGACACCACCCGCCATCCGAGCCCGCCACTGCGCCTGACTCTCGGCTCCGACACCTATAGCGCAATCCACGCGGCACTCACCGAACGTCTCACCGCGCTCGAGACTCAGAAGGATCTCGCTGAATCTGTCGCCTTCACCCACTGAGCCCTTTCCAACCTGGCGGTTCGGGTGGGCAGTTGGGCTGAAAGACAGGTGGAGCCCCTGGTAGATGGGTTTTCGATCAAGAAATTCGTCTCCACCAAAGGCTTCGTGTGCTTGTCTGCCCGTCGGGCGTCGACGTGTCCAGCTCTGCCCTGCGTTTCCTGTCCGCC # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //