Array 1 67504-69056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRC010000019.1 Nocardia farcinica strain N-9 NODE_19_length_89212_cov_53.679362, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 67504 29 100.0 32 ............................. CAAGCGATCTGGTCCTCCAGCTCGGCGAGGCG 67565 29 100.0 32 ............................. CCGCCCGGCTGCCCCGCGGCCCCGCCGCCTCC 67626 29 100.0 32 ............................. CAATCCCGTCCGAGCATGGCCCGATGCGTGCT 67687 29 96.6 32 ............................A GGCCGGTGCCGACTTCTTCGCCCAGCACAGGA 67748 29 100.0 32 ............................. ATCGCCGACGGCCCCGACATCGACGATGTCCC 67809 29 100.0 32 ............................. AGCTCCGGGTCAGGGTCCGGCCATTGGCCGTT 67870 29 100.0 32 ............................. GAGATCCCGCGGGGGTGCCAGGCGCCCCACTG 67931 29 100.0 32 ............................. CGCTTGATCGCGGCATCGCGCATCGGGGCGGT 67992 29 100.0 32 ............................. ACCACCTCCCGGCGGACCGGCGAGCGTGATCC 68053 29 100.0 32 ............................. CCGGATCGGAACGCGGTCCCCGAGCAGCAGAT 68114 29 100.0 32 ............................. CGGCCAGGGCCGTTCATCGTGTACCGCGCCCA 68175 29 100.0 34 ............................. CCCCCCGGACCCACCGGAACCGCCGGTGCCACCC 68238 29 100.0 32 ............................. GCTTCCCACTGCTCGCGCGTGTACACCGTCAT 68299 29 100.0 32 ............................. GTCGTCCTGCCAAGCAATCAATTCCATGTCCA 68360 29 100.0 32 ............................. TGTTGGATCACCGGGCCGAGCGCGTCGAAGAC 68421 29 100.0 32 ............................. GCGATGATCTCGCCCACGGTGGCGAACGTGGC 68482 29 100.0 32 ............................. CACCTGTGCCCGAAGGCGGCGGCTTTACAGGC 68543 28 96.6 32 ....-........................ TCGTTCTTGCGACGGGGATCTCGTCGCAGTCA 68603 29 100.0 33 ............................. TTGGAGGCACCCGAGCGGCGGTCGACCTGCTCC 68665 29 100.0 32 ............................. CCGTCCGGCACGCCGCCGGGCCAGAAGACCTC 68726 29 100.0 32 ............................. CAGCCCGACGACCGCGTGGTCAGCCTGAGCAA 68787 29 100.0 33 ............................. ATTGCCGATGGCCCCGACATCGACGATGTCCCG 68849 29 100.0 32 ............................. TATGCGGAGGAAGTAGAAGAGGTGGTAGCGCT 68910 29 96.6 87 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGAAGTGCCTCCCGCGGGAGGGATGAGCCCGAAGACTCGACGCGTTGTCCCGCCAGCGGG 69026 29 82.8 0 .........C....T.....A......GG | A,T [69043,69051] ========== ====== ====== ====== ============================= ======================================================================================= ================== 25 29 98.9 34 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : TGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGTTGGTCCGGGCTGCGGTGGCGATGGGTCGTCGACGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGAATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCCGTCTTGTCCCTCAGCGAGGTTGCCCGTCTTGTCCCTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : GTTGACGCCGGGAACCCGGAGGCCGGTTTCCTCTTCGACCTCGCGTGCTAAGACTTGGTCGAGGATCTCCCCGGGTTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTGGGCGCAGCAGCAGGATGCGGCTGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGACATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCTGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGGCGGCGGTGAACTGGAAGTTTTCGCA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76224-77045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRC010000019.1 Nocardia farcinica strain N-9 NODE_19_length_89212_cov_53.679362, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76224 29 100.0 32 ............................. GATCGCGCGGCCAGTCGCGGCCATCGCCGCTT 76285 29 100.0 32 ............................. TGAATCCGCGACCGAATCCAAGAGCACCACCA 76346 29 100.0 32 ............................. TACCCCGCGGCCTGGAAGCCGTAGGGGCTCAA 76407 29 100.0 32 ............................. GGGGCGCCTGAGCGTGACGGCACCCGCCACCG 76468 29 100.0 32 ............................. TCATCGCCGCAAAAGCTCATTGCCAGGGTGGT 76529 29 100.0 32 ............................. TGGCGGGCGTTCGCGCTGGGTTCGATGTTGCG 76590 29 100.0 32 ............................. CCAGGCCAGTGCCTCCTGCGCCAGTTCCACCG 76651 29 100.0 32 ............................. CCGGCGCCGGACCCCACCGCGACCGCCAGCCC 76712 29 100.0 32 ............................. GGGTTGACACTGGTCCGCAACGAGACCGGTAA 76773 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 76834 29 100.0 32 ............................. TCGAAGTTGTACTGCAGCACGGTCGCGATACC 76895 29 100.0 32 ............................. TCGCCTCTGGAGCCTGGCACGAAACGCTCGGC 76956 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 77017 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGACAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCTGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : CTGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 190-585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRC010000043.1 Nocardia farcinica strain N-9 NODE_43_length_14395_cov_54.023059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================== ================== 190 28 96.4 33 ..................T......... CGCGTCGAATTCGTACGAGACCGACGCGGAGCT 251 28 100.0 33 ............................ CTTCGGTCCGGGCTCACCTACGGCAGTCCCGAC 312 28 96.4 33 ..............C............. CGGACAATCCGACGTTTCCCCGATAGCTTCCGC 373 28 92.9 47 ..............C..........C.. CCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTCGAC 448 27 75.0 83 A..T....G..A.....-C........A CGGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACGCCACCGCGCCGT 558 27 75.0 0 ....G....A...G.......G.-..GA | C [578] ========== ====== ====== ====== ============================ =================================================================================== ================== 6 28 89.3 46 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGGTGTTCCACAAGGGCAAGCTCCTCGAGCGGCCGGTCGACATCACCCCGGAACCTTCGCCCGACACCCCAGTGTCCGAGGTCGCCTGACGACTCCCAATCCACAGGATTTGACTATTACTCCAGGGCAACCCGAGTGAAAGTGAACGAAAACTGTGGGTTTCGGCTGAGGAACTGCAGGTCAGGAAGTG # Right flank : ACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTACCGCTTGCTACCCTCGCTCATGTCCCGCCGCCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTTTCTCTCGTAAGGCATCTCGCTGATTCGGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCACACACGCCGGCGGATCTCGGTTGGCTTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACGCACGACATCGGGAAGCTCACGCCGGCGTTCGCGTGCCAGGTTCCCGAGCTGTGCGATGCGATGCACGACCGAGGGCTGCGAATGCCGGATGCGCTCGGTGATCGAAAGG # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9633-11167 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRC010000043.1 Nocardia farcinica strain N-9 NODE_43_length_14395_cov_54.023059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 9633 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 9694 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 9755 28 100.0 33 ............................ TGGCTCGCGTCGACGTACGGCCAGGCCACCGCA 9816 28 100.0 33 ............................ CAGGCCGGTCGCGCTGACCTTGCCGATGACGCA 9877 28 100.0 33 ............................ CCCGAGACCGCAGGCGCAGGTGGTCGACCGGGA 9938 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 9999 28 100.0 33 ............................ CGTCAAGATCTGGGAATACGCCCGGGTCTTCGT 10060 28 100.0 33 ............................ CGGCCGCACCTTCGACCCCCAGCCGGACGCTTT 10121 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 10182 28 100.0 33 ............................ CCTGTTCGAGGGCCTGGACGAGACGCTGCTGCA 10243 28 100.0 33 ............................ CCGGGGTGCGGAACTTCATCCGCGACGACCAGG 10304 28 100.0 33 ............................ CGGTCAGGCTCACCGCGCCGACACCGACGGCGA 10365 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 10426 28 100.0 33 ............................ CGAGGCCCTCGAGGCAGCCATCAACATGGCGGG 10487 28 100.0 33 ............................ CGGCGTGACCGTCGCCAGCGTCACCGGCGCGTC 10548 28 100.0 32 ............................ CTGGACGGCGGCCGGGTGTCGAGCAGTGCGGG 10608 28 100.0 33 ............................ CGGCGCCACCCCGCCGATGCCATCCCCGACAAA 10669 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 10731 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 10792 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 10852 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 10913 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 11139 28 71.4 0 ...G..TG.....CG.TC..A....... | G [11166] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 23 28 98.6 41 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCTCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.70, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72005-73922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRC010000005.1 Nocardia farcinica strain N-9 NODE_5_length_369460_cov_51.802308, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 72005 28 100.0 33 ............................ CCACAGTTCATCGATGTAGACGCACCAGCCGCC 72066 28 100.0 33 ............................ CTGAATCCGCGACCGAATCCAAGAGCACCACCA 72127 28 100.0 33 ............................ CCACTCCACCACCTTCACTGCTGATGGCCCGAT 72188 28 100.0 33 ............................ CCCGCGCACCTGCGAGAGGTAGGTGTTCGGGCT 72249 28 100.0 33 ............................ CAACCCGCACTTGGCCTACCCCGAAGTCGAACC 72310 28 100.0 33 ............................ CTTCTCGGCGGTCGCGGTGGCCACGTCGGTGAA 72371 28 100.0 33 ............................ CATGAGATCGCCGAAAAGATGCGAGCCGAGTTG 72432 28 100.0 33 ............................ CCGATGAGCGAGAGAATTGCTTGGCAGGCCGAC 72493 28 100.0 33 ............................ CTGTAAGCGGGTAAAGCTTGGTCAATTGGGGTC 72554 28 100.0 33 ............................ CGCAACGTTGCGAGCGTCGCGGAAGTCGCTGCG 72615 28 100.0 33 ............................ TCCATTACCGCCAATGGTCGCGTCACCGGCACC 72676 28 100.0 33 ............................ CTACTACGACGCGGCGCGGGACTTCATTCTCGA 72737 28 100.0 33 ............................ CGGCCCTCACCCCATACCGAGATACCCGATTGC 72798 28 100.0 33 ............................ CTTGCTGCGCGAGCAGCACCTCACCCCGGCCTG 72859 28 100.0 33 ............................ CCTGACCGCCAACGGCGTCGCTGACCGCGTGCA 72920 28 100.0 33 ............................ CGGCGCGGTGATCAGTCAGTTCAACAGCGGCTA 72981 28 100.0 33 ............................ CAGGCGTGGCCGCACCGGCACCGCTGGCCCCTG 73042 28 96.4 33 G........................... CCCGATGGCGTGGAGAAGACCCGGCAAGCATTC 73103 28 96.4 33 G........................... CTCGCCGAACTCGCCTGACCCCCGACACGGACT 73164 28 96.4 33 G........................... CCACCCCGACACCGAGCACGTCACAGCGAACCT 73225 28 89.3 34 G.......G..............T.... CGCGGGCCTGGTGCAGCACGCCATCGCGATCCGA 73287 28 96.4 33 G........................... CGCGCTGTCGGCGCAGGTCAGCGCGTACCGGTC 73348 28 96.4 33 G........................... CACCAGCTTGCTGGTACTACGTGAAGCAACCAT 73409 28 96.4 33 G........................... CCACATGGCGACGTAGCGGGGCTGTTCGTCGGT 73470 28 92.9 33 G...........T............... CATCCGGCCGTTGTCGGTCGACAAGTCCACGTC 73531 28 92.9 33 G.............C............. CCGCCTGATCTGTACCGGCGGGGACGCCCACCG 73592 28 85.7 33 G...........TGC............. CAGCTCGAGCGCGATGACCTCGATCGCCTGGTC 73653 28 92.9 33 G.....T..................... CAGGTCCGCCACGGTGGGCTGCCCCGCGGCCAC 73714 28 96.4 33 G........................... CTCCTCGAGGTCGAGCATCGACCGGGCCGGAGC 73775 28 85.7 33 G..........A..C.T........... CGCGGCGATCTCGTCGGCCCGGTCGCCGTCATG 73836 28 82.1 33 G..TA.........C...........T. CGACGACAACAACCTATGGGTGCTGTGCGACAG 73897 26 89.3 0 G............--............. | ========== ====== ====== ====== ============================ ================================== ================== 32 28 96.4 33 ATGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCAGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGACTTCGTGCGTCCAGGGGGTGCATGCGGTACACGTCCAGGACCGCGAGCGGGAACGAGGCCACAAGCGTCAACAGGCTCGTTGTGGGGGCTGTTGGAGCTCGTGGGGCCTCCCTTCCGGTGTTGGAGGCGTGGGTGGTGGGAACCTGTGCGGAGGCTCACGCGGGACAAACGGAGATGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCGCGACCTGGTCGCGTGCGGGCTGGGCGAGGCCGTACCCCCGCGCATGCGGAACCGCCTTATTCGGTCGGCGCGGCAACCGCACCAACCGCCCGCTGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCACGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGGCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGTGAACCTCCCAGTCGAAGGCCGCGCGGCGCCGCCCCTTCGCATTCCTAGACGTC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //