Array 1 3620150-3618534 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051372.1 Salmonella enterica subsp. enterica serovar Newport strain CVM 24374 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3620149 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 3620088 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 3620027 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 3619966 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 3619905 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 3619844 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 3619783 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 3619722 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 3619661 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 3619600 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 3619539 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 3619478 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 3619417 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 3619356 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 3619295 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 3619234 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 3619173 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 3619112 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 3619051 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 3618990 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 3618929 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 3618868 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 3618807 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 3618746 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 3618685 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 3618624 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 3618563 29 100.0 0 ............................. | A [3618536] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3638005-3636819 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051372.1 Salmonella enterica subsp. enterica serovar Newport strain CVM 24374 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3638004 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 3637943 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 3637882 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 3637821 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 3637760 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 3637699 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 3637638 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 3637577 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 3637516 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 3637455 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 3637394 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 3637333 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 3637272 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 3637211 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 3637150 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 3637089 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 3637028 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 3636967 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 3636906 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 3636846 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //