Array 1 72213-70182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJN010000012.1 Listeria seeligeri strain FSL W9-0607 NODE_12_length_116117_cov_112.226629, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 72212 29 100.0 36 ............................. AGAAGAAATCCTTATTCCTGTCTTTTAGTTTTCTTC 72147 29 100.0 35 ............................. TGTCTACCAACTCCAAGAAAGTACACCCGTCTTCC 72083 29 100.0 36 ............................. GAAATTAAGACAACAATAGCAGTAGAAGTTATATCT 72018 29 100.0 36 ............................. AAAACAGAGCCTCCGCCGTCCCAGCCGGTAAGAAGA 71953 29 100.0 34 ............................. TTGCTTTCGGCAGGTACAAAAGCACTATCGAACG 71890 29 100.0 35 ............................. ACTAAAATTGGTGCGACAATTAATGAGAAAATCGC 71826 29 100.0 38 ............................. AGAAAAGATATTTTATGTATTGATGTGAAGTCCTTTTT 71759 29 100.0 36 ............................. TGCTCTCTCAAGTCGTCAGCAACCATCACGATGTCA 71694 29 100.0 35 ............................. TAACCACCTTGTTCAGCATAACGCCCCTGATGATA 71630 29 100.0 36 ............................. ATTCCATGGAGGATGCTCCTGATGGTAAATATTCAC 71565 29 100.0 36 ............................. AGTTGTATACTTATCGTAAACGGCTTTTGGTTTTAG 71500 29 100.0 35 ............................. TCATTTGATGTCGCCAAGCTATTACCTTCAATTAC 71436 29 100.0 34 ............................. TTTGTTTGGGGGCGGAGCGGCTCTTATTCGCTTG 71373 29 100.0 34 ............................. ATCATCACCCGTGAATGATATAACCGCTAACTCA 71310 29 100.0 36 ............................. ATCATTGCGCGTCCGAAAGGGCTAGAAGTGTCAAGC 71245 29 100.0 36 ............................. ATATGCACCACTGTCGTATTGACGTGATGTTTTCTT 71180 29 100.0 35 ............................. TTATTCCCGTTATTTGATGCCGCGGCACAATATTC 71116 29 100.0 35 ............................. CAACTAATCGAAGCGGCTATAACGATTGTCATGGC 71052 29 100.0 36 ............................. ATCACAAATGGAGCGGCTAACAAGGTCTTAAAAGAA 70987 29 100.0 36 ............................. GTTATTGAAAAGAATATGCAAATATATATAAATAAT 70922 29 100.0 35 ............................. TTTTCACTTGCATATTTTGATAAGATGTTTTCTTC 70858 29 96.6 34 .......C..................... ACCATCCCGTCTGCTGTAAAATATATTCAAGCGC 70795 29 96.6 37 .......C..................... CATGGTATATTTATCATATACTGCCTTAGGTTTTAAT 70729 29 96.6 35 .......C..................... CTCCGTATACTTTCAAATAGAATTTACTAAGTTGA 70665 29 96.6 36 .......C..................... AAAAACACGCGCGATCTGACACCGCTTTGCAACTTC 70600 29 96.6 37 .......C..................... AATTTTTCGATGGTGTCTAAGCCGTCGACCACAATAC 70534 29 96.6 35 .......C..................... AATATGCACCAAATGAGCTATTGCAAATCATGGAT 70470 29 100.0 36 ............................. ACCGGTATTTTCATAGATTTAAGTTTCGCTGGATCA 70405 29 96.6 36 .......C..................... AAAAAAGAAATGCGCAAATGGTTTATGCACGTTATC 70340 29 96.6 36 .......G..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 70275 29 82.8 36 ..A....C....C........TC...... GTGGTCAAAGCCTTCTTATTGCCAGCAGGTGAGCCC 70210 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 32 29 97.9 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 83569-80811 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJN010000012.1 Listeria seeligeri strain FSL W9-0607 NODE_12_length_116117_cov_112.226629, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 83568 29 100.0 36 ............................. AACGCCATCATTCAAAGTCATATCCACATTTATTTT 83503 29 100.0 34 ............................. CCAATTAGTTTACTCATAGCGCCGAATGCTTGCG 83440 29 100.0 35 ............................. GCAGTTATTACGGTGGCTGGTGCGGCTTTGCTTGG 83376 29 100.0 35 ............................. ACAGCCTTTATCACAAGTTGGATGGAGCTAGCCAC 83312 29 100.0 35 ............................. ACACTTACACACCACACCAAAGTTAAATGCCGTAG 83248 29 100.0 36 ............................. CTCAATAAGCTCTCTTTCTGTGAAGGTCACTTGGTG 83183 29 100.0 36 ............................. TGTAATTACACCTCCCCAGGATTGTAGATACCTACG 83118 29 100.0 34 ............................. TTGCTTTCAGAGGTGAGAAAAAACATGCAATCAA 83055 29 100.0 37 ............................. GTGGTCAACTTAAATGATGGGACACCAGTTAAATTTC 82989 29 100.0 38 ............................. GCACAGATTAGACAGATTACCAATGCCAAAGTACAAGG 82922 29 100.0 35 ............................. TTGTTCATCTACAGCATAAACTAGGCGACAAGAAA 82858 29 100.0 37 ............................. AATCCACCGACTTTTTCACCAGCATTATTTTTGTTCA 82792 29 100.0 36 ............................. CTGGAAGAGGCGTGGCTAAAGATAGCTGAAATGAAG 82727 29 100.0 37 ............................. AGCCCAAATTGGTTATGGAAACGAGGAAGCTAAGTTC 82661 29 100.0 36 ............................. TAATGTGTCAAGAGCTGCTAGAGAGTCCGGATATTC 82596 29 100.0 37 ............................. CAGAGTACTTACTTATTCGCACATGAATTTAGCAATG 82530 29 100.0 38 ............................. TAAGCGAGTGTCCAGCGTGTTCGCTATGTCACTTAACT 82463 29 100.0 36 ............................. CATTGTAAAGCGAAATTAACTTTGTTCGATGGTGAC 82398 29 100.0 35 ............................. CGAAATACTCTTTATTTAGTCTCATTGTCCTAACT 82334 29 100.0 38 ............................. GCGATTGAAATTGTGAAAAATCGTAAATTAACGGTACG 82267 29 100.0 34 ............................. AAACCTCGAAACGAGAAAAATCGGCAACTTTGGC 82204 29 100.0 34 ............................. CTTGTTTTTCTTGGGGCATCTTTCTACTCCTTTC 82141 29 100.0 37 ............................. TTACCTCAAAGTGGCAGATGGTTTTATGGGGTATATC 82075 29 100.0 36 ............................. ACGAATTATTGGACGGCTGGCTGACCGTGATATGAC 82010 29 100.0 37 ............................. ATATGTATTCAACTATTATTCAGCAAAAGACTTGACA 81944 29 100.0 35 ............................. CAAGGTCACCAAAGTTCCATTTCGATAGGTCGGTA 81880 29 100.0 42 ............................. TGGTTACTGTCAGTAATTGAACCTGTTTAGTATCGACGACGT 81809 29 100.0 36 ............................. TCGTCCCAGCAATCATCAACAATTAGCGGATTTTCA 81744 29 100.0 33 ............................. AAGCTTAAATCTGAAACATTCCAAGAACCATCA 81682 29 100.0 36 ............................. ACACTATCTACGTGGTGTATTTCACCTCTGCGACCT 81617 29 100.0 37 ............................. AGACCAGACCAGTTCATCACAAACAGTCCGGTCGTCC 81551 29 100.0 35 ............................. TTCAATCACCTTCTTTCTTGTGTATCGACTTTATT 81487 29 100.0 36 ............................. CTAAATACGCCAGAAATGACCTGCCAGATGCCTTTT 81422 29 100.0 35 ............................. CTATGATATCTTCAAGGGCATATCTACATGTATCA 81358 29 100.0 35 ............................. ATTAGTTGTACTTCATTCATTTTCATGATAATTCC 81294 29 100.0 36 ............................. ACTAATCAGCCCTATAATGATATCCCGACGACTATC 81229 29 100.0 36 ............................. TGACATCACCCGTTAAACCCACCACAACATGTCCCC 81164 29 100.0 35 ............................. TCTGGTAAATCGTCCATGTCAAAAGGTAGGTCTAA 81100 29 100.0 37 ............................. AAGTTTTTCCGGTTTTCAGCAACGATGACTACGAAGA 81034 29 100.0 38 ............................. AACTTTTTCTGCTGCCTCATTTGTCATTTTGCACCTTC 80967 29 100.0 35 ............................. ACGACTAAATACGAATCAGCTAGGCATCAAATGAA 80903 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 80840 29 86.2 0 ........C....C..A...........G | T [80813] ========== ====== ====== ====== ============================= ========================================== ================== 43 29 99.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACAAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 90022-89796 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJN010000012.1 Listeria seeligeri strain FSL W9-0607 NODE_12_length_116117_cov_112.226629, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 90021 29 100.0 34 ............................. ATAGGTTAGGCACTATCTTAAGTACTAAGATTGA 89958 29 100.0 40 ............................. TCATTATCTAAAGTACACAAATAAATATTACCATCACTAG 89889 29 100.0 36 ............................. TTTTAACGGTGGTAGTTGTTAAGATATTACCATCTT 89824 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 4 29 100.0 37 GTTTTAATTACTCATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGTTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTACTTCAAGAGACCAGAAGTGTTTTAACTACTTTTAATCATCCCAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCGAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTCATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //