Array 1 6277-5186 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NAXD01000004.1 Streptococcus agalactiae strain NNA034 contig12, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      6276	    36	 100.0	    30	....................................	CCGTTCAATCTGTTCTTGCTTTTGGTCATC	
      6210	    36	 100.0	    30	....................................	AAGGGTGTTAGATGATAATACCTTTTTTAA	
      6144	    36	 100.0	    30	....................................	ACACCGTTGCGGTTGTTGTCGGTCACTCAA	
      6078	    36	 100.0	    30	....................................	TCTATTAACAATAGTTTTATCCAATTGTTT	
      6012	    36	 100.0	    30	....................................	TGAAAACAAGCGCAAAGCTGTCAGAAAACA	
      5946	    36	 100.0	    30	....................................	AGTTATCAATGCTATATGGTTTCTCATCTT	
      5880	    36	 100.0	    30	....................................	GTTTAATTTTGAATAATATCATGTTTACTC	
      5814	    36	 100.0	    30	....................................	TATGTCATTGTGATTGTGGGAATACTTGTG	
      5748	    36	 100.0	    30	....................................	GGCGAACTTGTAACGTTTGACGGTAATTTT	
      5682	    36	 100.0	    30	....................................	TAATGTCTTTTCCTAGAATGTACATTTCTA	
      5616	    36	 100.0	    30	....................................	ATTACTTTCAAGATGTCTATGACTATATGC	
      5550	    36	 100.0	    30	....................................	TATTTCATCATAGAAAATCCTGCTAGTGGT	
      5484	    36	 100.0	    30	....................................	GCGATGATGGTAAGTCATCATGGACAGCGT	
      5418	    36	 100.0	    29	....................................	TTTTACCAATGCTTCCATATCGCTTATAT 	
      5353	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA	
      5287	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT	
      5221	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//