Array 1 40546-39479 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHCVX010000034.1 Escherichia coli strain 2863-50 EC2863-50_S17_L001_NODE_34_49293_cov_17.638409, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
     40545	    29	 100.0	    32	.............................	ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 	
     40484	    29	 100.0	    32	.............................	CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 	
     40423	    29	 100.0	    32	.............................	CTATTGGCCTCACTGCCACCGCAGTTAATACT 	
     40362	    29	 100.0	    32	.............................	GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 	
     40301	    29	 100.0	    32	.............................	GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 	
     40240	    29	 100.0	    32	.............................	ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 	
     40179	    29	 100.0	    32	.............................	GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 	
     40118	    29	 100.0	    32	.............................	CGATGATGTAATAATTAGAGCAGAATCCAGTT 	
     40057	    29	  96.6	    32	......A......................	CAAAATTTAAAATCATTTAAGCTTGTAAAACC 	
     39996	    29	 100.0	    32	.............................	GGTACACGGATATTCTGTCTAAAAGTTAACTA 	
     39935	    29	 100.0	    32	.............................	AATGACTTTATCGACCGCCCGATCGATGTTCA 	
     39874	    29	 100.0	    32	.............................	CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 	
     39813	    29	 100.0	    32	.............................	ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 	
     39752	    29	 100.0	    32	.............................	GACTCAACCGCGCTTCCCGGCCTCACCACTGC 	
     39691	    29	 100.0	    32	.............................	GCGAAAAAATACGGCTGGATGCGACAAAAAAA 	
     39630	    29	 100.0	    33	.............................	GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC	
     39568	    29	 100.0	    32	.............................	CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 	
     39507	    29	 100.0	     0	.............................	|                                	
==========	======	======	======	=============================	=================================	==================
        18	    29	  99.8	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT
# Right flank :  GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.51   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//