Array 1 71798-72230 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMGW01000002.1 Enterococcus faecalis strain MP5-2 DIV1225F_trimmed__paired__contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 71798 37 97.3 29 ....................................A TTTAAGATTAGATATGAACAACTTACGTT 71864 37 100.0 29 ..................................... CAATCCATTCAGCAACTATATTGTGTTTA 71930 37 100.0 29 ..................................... TCATTGGTAACTTAGCCGTTAATCCTTTT 71996 37 97.3 29 ....................................A TCATCTCATCGACTAAATATGCTTTGTAT 72062 37 97.3 29 ....................................C CACTTTATTAATTGCTTGTCAACACGTCT 72128 37 97.3 29 ....................................G TATCTACGTGCATAATCATATCGACTCAT 72194 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 98.1 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : GCACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTATAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTACTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG # Right flank : CAATGTAAATGCTCATTATGATTTACATATGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATATGGTTATTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAAAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTCAAGTTAACCACATTGAAAGATAAACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAGAGCGGATTAATTTCCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 63118-62487 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMGW01000012.1 Enterococcus faecalis strain MP5-2 DIV1225F_trimmed__paired__contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 63117 37 100.0 29 ..................................... AGCTAAAGGAGCAGTAGTAAATGTCAATA 63051 37 100.0 29 ..................................... TTTTCTTAATATCCTGCTCCATAGCCACT 62985 37 97.3 29 ....................................T CCGCCTATGATTACATCGCCTAGAACGTT 62919 37 100.0 29 ..................................... GAAAGCTAAAAAGCGTTTTATTATTGCAC 62853 37 100.0 29 ..................................... ACAATTAGCGCCAGCTGGCCAGATTCAAT 62787 37 100.0 29 ..................................... CAGAAATATCAAACGCAAAAAAAGGTTTC 62721 37 97.3 29 ....................................G TTAAATTTTACATCAACAAGCCAACCGTT 62655 37 97.3 29 ....................................G AAAAGCAGTTCGAGCGGAAACTGCGACCA 62589 37 94.6 29 ....................G...............G ACTTACAAAAGACTGTGATTTACGTTATA 62523 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 10 37 98.6 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGTCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTTGGAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //